YBFO - BACSU - GREMLIN Contacts

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YBFO - Putative hydrolase YbfO

UniProt:	O31455	Sequences: MKRMIVRMTLPLLIVCLAFSSFSASARAASEEKYWDHWIERHAQPLDASNASNKDLRFLKKVLKGKRIVQLGETTHGAGEINATKVRMIKYLHEELGYDVLAFESGFPDTNASYLNMDQLTPKSTMKNSIYAVWHTEDVVELFDYMKEQKEKGDPLILTGFDIQSMKNSFNVAATQWVKAVDPEKAELLSQSENDFSTLVTDSNTFDEFSQKKEKLVKNYQKLIKFTKTHASELKENLPKEPKAYEMFMHSLQLRIDVMETYMLEEMKEKLEEYPENIEDFSFFMRDRMMAEQFQWVADTLYPKKKIIVWGHNYHLRKQNTKMIKDWVQLNGPNMGDYLPERLKKQTYTIGIYAYSGASLDSSDNKTVKPVTSPPPSGSLEALLKAADRPAVFVDFLHTKNKKGTSWMYTPRTALYWGYMEEQMILKEQYDGVIWLEHITPSVIIK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	446 (382)
Sequences:	1147 (868)
Seq/√Len:	44.4

BACSU - YBFO
HALSA - Q9HP44

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
295_Q	342_R	4.396	1.00
114_Y	118_D	4.348	1.00
64_K	96_L	4.006	1.00
91_Y	95_E	3.520	1.00
102_A	161_F	3.446	1.00
68_I	343_L	3.262	1.00
385_K	437_E	3.256	1.00
295_Q	343_L	3.221	1.00
353_Y	433_V	3.214	1.00
99_D	154_D	3.165	1.00
67_R	346_Q	2.978	1.00
89_I	308_I	2.957	1.00
146_M	156_L	2.951	1.00
350_I	432_G	2.922	1.00
294_F	309_V	2.906	1.00
87_R	90_K	2.883	1.00
316_L	349_T	2.826	1.00
67_R	298_A	2.825	1.00
287_D	290_M	2.821	1.00
294_F	339_L	2.719	1.00
355_Y	375_P	2.718	1.00
69_V	98_Y	2.614	1.00
70_Q	347_T	2.593	1.00
380_L	426_L	2.581	1.00
57_R	91_Y	2.521	1.00
382_A	386_A	2.517	1.00
63_L	96_L	2.488	1.00
234_L	245_Y	2.429	1.00
68_I	298_A	2.354	1.00
161_F	335_M	2.330	1.00
318_K	340_P	2.323	1.00
89_I	101_L	2.286	1.00
71_L	142_L	2.269	1.00
139_V	158_L	2.225	1.00
90_K	94_E	2.222	1.00
100_V	307_I	2.218	1.00
337_D	341_E	2.168	1.00
79_G	83_A	2.162	1.00
380_L	427_K	2.146	1.00
60_K	96_L	2.139	1.00
60_K	91_Y	2.092	0.99
118_D	155_P	2.085	0.99
181_V	234_L	2.073	0.99
116_N	144_D	2.071	0.99
89_I	146_M	2.066	0.99
311_G	335_M	2.064	0.99
103_F	158_L	2.062	0.99
93_H	156_L	2.044	0.99
76_H	104_E	2.039	0.99
79_G	138_D	1.999	0.99
356_S	438_H	1.977	0.99
372_T	417_W	1.958	0.99
353_Y	435_W	1.923	0.99
145_Y	149_Q	1.917	0.99
104_E	162_D	1.830	0.99
76_H	286_R	1.827	0.99
78_A	81_I	1.741	0.98
66_K	348_Y	1.711	0.98
391_A	437_E	1.711	0.98
113_S	158_L	1.696	0.98
104_E	286_R	1.688	0.98
98_Y	306_K	1.687	0.98
360_L	369_K	1.684	0.98
76_H	162_D	1.674	0.97
38_W	42_H	1.667	0.97
292_E	342_R	1.660	0.97
159_T	297_V	1.658	0.97
75_T	81_I	1.651	0.97
142_L	146_M	1.638	0.97
355_Y	385_K	1.626	0.97
100_V	159_T	1.621	0.97
384_L	433_V	1.611	0.97
348_Y	393_F	1.591	0.97
286_R	290_M	1.581	0.96
69_V	92_L	1.580	0.96
91_Y	96_L	1.578	0.96
94_E	149_Q	1.571	0.96
145_Y	150_K	1.553	0.96
113_S	143_F	1.538	0.96
96_L	306_K	1.523	0.96
414_A	424_M	1.521	0.95
85_K	164_Q	1.516	0.95
363_S	370_P	1.514	0.95
74_T	426_L	1.498	0.95
71_L	434_I	1.495	0.95
76_H	312_H	1.493	0.95
121_T	125_T	1.483	0.95
78_A	439_I	1.483	0.95
162_D	312_H	1.478	0.95
116_N	143_F	1.468	0.95
412_R	426_L	1.467	0.94
225_K	229_T	1.466	0.94
48_A	55_D	1.460	0.94
253_Q	292_E	1.454	0.94
353_Y	381_E	1.448	0.94
114_Y	159_T	1.437	0.94
148_E	151_E	1.434	0.94
83_A	138_D	1.433	0.94
162_D	286_R	1.421	0.93
73_E	76_H	1.417	0.93
250_H	253_Q	1.411	0.93
291_A	335_M	1.410	0.93
55_D	87_R	1.409	0.93
70_Q	339_L	1.404	0.93
93_H	145_Y	1.392	0.93
171_N	176_Q	1.384	0.93
298_A	307_I	1.383	0.93
149_Q	156_L	1.383	0.93
69_V	308_I	1.382	0.93
56_L	84_T	1.365	0.92
81_I	354_A	1.344	0.91
104_E	315_H	1.338	0.91
39_I	387_A	1.335	0.91
312_H	316_L	1.335	0.91
114_Y	150_K	1.333	0.91
137_E	443_V	1.332	0.91
121_T	124_S	1.328	0.91
81_I	312_H	1.310	0.90
230_H	234_L	1.310	0.90
348_Y	432_G	1.304	0.90
77_G	351_G	1.299	0.90
149_Q	152_K	1.282	0.89
78_A	361_D	1.277	0.89
218_K	222_K	1.266	0.89
73_E	104_E	1.265	0.89
255_R	292_E	1.254	0.88
161_F	293_Q	1.250	0.88
76_H	315_H	1.245	0.88
173_A	176_Q	1.243	0.88
56_L	87_R	1.230	0.87
230_H	233_E	1.207	0.86
46_L	95_E	1.183	0.85
104_E	290_M	1.178	0.85
424_M	430_Y	1.174	0.85
63_L	66_K	1.172	0.85
110_T	158_L	1.171	0.85
60_K	63_L	1.156	0.84
62_V	348_Y	1.148	0.83
355_Y	382_A	1.146	0.83
344_K	347_T	1.138	0.83
101_L	146_M	1.131	0.82
177_W	248_F	1.127	0.82
40_E	389_R	1.123	0.82
101_L	142_L	1.114	0.81
226_F	234_L	1.114	0.81
188_L	191_Q	1.108	0.81
76_H	290_M	1.108	0.81
55_D	59_L	1.107	0.81
80_E	138_D	1.097	0.80
248_F	252_L	1.087	0.80
73_E	352_I	1.086	0.80
182_D	234_L	1.085	0.80
352_I	434_I	1.083	0.80
99_D	305_K	1.082	0.80
123_K	137_E	1.077	0.79
132_A	361_D	1.061	0.78
395_D	398_H	1.057	0.78
137_E	141_E	1.052	0.78
77_G	418_G	1.052	0.78
103_F	139_V	1.048	0.77
153_G	346_Q	1.045	0.77
440_T	443_V	1.037	0.77
85_K	310_W	1.037	0.77
235_K	238_L	1.030	0.76
131_Y	164_Q	1.027	0.76
378_G	382_A	1.025	0.76
316_L	334_N	1.025	0.76
93_H	150_K	1.024	0.76
393_F	432_G	1.022	0.75
89_I	93_H	1.008	0.74
104_E	312_H	1.007	0.74
320_N	333_P	1.005	0.74
163_I	255_R	1.004	0.74
106_G	109_D	1.002	0.74
425_I	428_E	1.000	0.74
387_A	392_V	1.000	0.74
349_T	430_Y	0.999	0.74
398_H	428_E	0.998	0.74
162_D	311_G	0.990	0.73
102_A	294_F	0.989	0.73
134_W	310_W	0.988	0.73
152_K	155_P	0.985	0.73
122_P	140_V	0.984	0.73
59_L	62_V	0.983	0.73
80_E	108_P	0.978	0.72
114_Y	155_P	0.972	0.72
255_R	258_V	0.966	0.71
94_E	152_K	0.966	0.71
100_V	297_V	0.965	0.71
72_G	76_H	0.955	0.70
84_T	436_L	0.946	0.70
116_N	147_K	0.944	0.69
130_I	165_S	0.944	0.69
149_Q	154_D	0.938	0.69
93_H	142_L	0.937	0.69
85_K	313_N	0.933	0.69
126_M	129_S	0.932	0.68
86_V	90_K	0.930	0.68
182_D	437_E	0.930	0.68
59_L	95_E	0.927	0.68
71_L	352_I	0.922	0.68
302_Y	305_K	0.922	0.68
152_K	394_V	0.917	0.67
180_A	342_R	0.915	0.67
82_N	136_T	0.914	0.67
114_Y	157_I	0.911	0.67
291_A	339_L	0.911	0.67
116_N	150_K	0.911	0.67
162_D	290_M	0.910	0.67
377_S	382_A	0.909	0.67
39_I	43_A	0.908	0.66
151_E	155_P	0.904	0.66
214_E	237_N	0.899	0.66
286_R	312_H	0.896	0.65
151_E	299_D	0.890	0.65
155_P	306_K	0.888	0.65
159_T	381_E	0.888	0.65
177_W	245_Y	0.886	0.65
257_D	261_T	0.885	0.64
46_L	91_Y	0.880	0.64
78_A	310_W	0.876	0.64
56_L	60_K	0.875	0.64
39_I	389_R	0.869	0.63
147_K	150_K	0.869	0.63
235_K	239_P	0.868	0.63
76_H	311_G	0.864	0.63
316_L	351_G	0.862	0.62
312_H	351_G	0.861	0.62
63_L	98_Y	0.860	0.62
56_L	59_L	0.853	0.62
191_Q	343_L	0.852	0.61
339_L	347_T	0.851	0.61
75_T	359_S	0.850	0.61
385_K	392_V	0.847	0.61
195_D	216_L	0.844	0.61
87_R	94_E	0.841	0.60
65_G	405_T	0.839	0.60
75_T	354_A	0.833	0.60
379_S	415_L	0.833	0.60
175_T	179_K	0.833	0.60
247_M	252_L	0.829	0.59
383_L	388_D	0.829	0.59
145_Y	347_T	0.828	0.59
252_L	255_R	0.826	0.59
166_M	293_Q	0.824	0.59
144_D	151_E	0.821	0.59
53_N	56_L	0.816	0.58
130_I	133_V	0.809	0.57
127_K	298_A	0.808	0.57
418_G	430_Y	0.808	0.57
117_M	309_V	0.807	0.57
173_A	393_F	0.806	0.57
70_Q	93_H	0.801	0.57
138_D	144_D	0.799	0.57
201_T	350_I	0.799	0.57
111_N	247_M	0.797	0.56
255_R	259_M	0.797	0.56
74_T	147_K	0.796	0.56
286_R	315_H	0.796	0.56
222_K	398_H	0.789	0.56
124_S	137_E	0.789	0.56
265_E	350_I	0.789	0.56
44_Q	58_F	0.789	0.56
207_D	337_D	0.787	0.55
68_I	344_K	0.785	0.55
314_Y	429_Q	0.785	0.55
417_W	421_E	0.782	0.55
234_L	238_L	0.781	0.55
91_Y	348_Y	0.779	0.55
294_F	307_I	0.779	0.55
382_A	428_E	0.779	0.55
47_D	55_D	0.773	0.54
235_K	240_K	0.772	0.54
59_L	87_R	0.772	0.54
207_D	211_Q	0.772	0.54
375_P	382_A	0.771	0.54
170_F	196_F	0.771	0.54
77_G	312_H	0.767	0.53
48_A	308_I	0.766	0.53
105_S	321_T	0.764	0.53
81_I	359_S	0.763	0.53
38_W	41_R	0.763	0.53
358_A	441_P	0.762	0.53
238_L	346_Q	0.759	0.53
143_F	314_Y	0.757	0.52
48_A	56_L	0.757	0.52
46_L	56_L	0.756	0.52
146_M	158_L	0.756	0.52
312_H	430_Y	0.754	0.52
63_L	348_Y	0.753	0.52
148_E	345_K	0.752	0.52
391_A	395_D	0.749	0.52
60_K	95_E	0.748	0.52
90_K	152_K	0.748	0.52
82_N	89_I	0.746	0.51
191_Q	345_K	0.746	0.51
123_K	140_V	0.746	0.51
256_I	259_M	0.742	0.51
186_A	325_K	0.741	0.51
135_H	314_Y	0.741	0.51
65_G	153_G	0.740	0.51
54_K	350_I	0.740	0.51
160_G	315_H	0.740	0.51
57_R	60_K	0.738	0.51
177_W	238_L	0.738	0.51
133_V	419_Y	0.737	0.51
151_E	230_H	0.735	0.50
360_L	442_S	0.735	0.50
80_E	351_G	0.734	0.50
217_V	221_Q	0.730	0.50
115_L	119_Q	0.728	0.50
250_H	296_W	0.728	0.50
120_L	143_F	0.727	0.50
126_M	140_V	0.727	0.50
73_E	162_D	0.726	0.49
107_F	296_W	0.726	0.49
319_Q	337_D	0.725	0.49
106_G	334_N	0.724	0.49
70_Q	145_Y	0.722	0.49
250_H	436_L	0.719	0.49
73_E	290_M	0.718	0.49
249_M	296_W	0.717	0.49
351_G	430_Y	0.717	0.49
71_L	308_I	0.716	0.49
136_T	314_Y	0.715	0.48
192_S	223_L	0.710	0.48
46_L	391_A	0.710	0.48
231_A	235_K	0.710	0.48
187_E	406_S	0.709	0.48
128_N	379_S	0.707	0.48
104_E	311_G	0.705	0.47
156_L	202_D	0.703	0.47
192_S	253_Q	0.703	0.47
120_L	409_Y	0.702	0.47
116_N	149_Q	0.701	0.47
82_N	85_K	0.700	0.47
78_A	354_A	0.699	0.47
80_E	426_L	0.698	0.47
339_L	349_T	0.697	0.47
189_L	223_L	0.696	0.47
222_K	428_E	0.692	0.46
119_Q	122_P	0.692	0.46
310_W	352_I	0.692	0.46
130_I	365_N	0.692	0.46
186_A	427_K	0.692	0.46
86_V	142_L	0.691	0.46
82_N	134_W	0.691	0.46
77_G	360_L	0.691	0.46
93_H	146_M	0.691	0.46
47_D	54_K	0.690	0.46
291_A	343_L	0.688	0.46
76_H	313_N	0.684	0.45
180_A	225_K	0.682	0.45
65_G	96_L	0.680	0.45
121_T	343_L	0.680	0.45
87_R	396_F	0.679	0.45
333_P	337_D	0.678	0.45
238_L	434_I	0.678	0.45
166_M	170_F	0.677	0.45
228_K	249_M	0.677	0.45
55_D	58_F	0.674	0.44
152_K	176_Q	0.674	0.44
171_N	201_T	0.674	0.44
309_V	339_L	0.673	0.44
79_G	112_A	0.672	0.44
68_I	100_V	0.672	0.44
142_L	436_L	0.672	0.44
411_P	425_I	0.670	0.44
176_Q	393_F	0.669	0.44
201_T	211_Q	0.668	0.44
116_N	145_Y	0.667	0.44
161_F	294_F	0.667	0.44
156_L	187_E	0.666	0.44
82_N	359_S	0.665	0.44
311_G	316_L	0.664	0.44
132_A	419_Y	0.660	0.43
139_V	142_L	0.657	0.43
134_W	164_Q	0.654	0.43
39_I	188_L	0.654	0.43
79_G	443_V	0.654	0.43
167_K	196_F	0.654	0.43
173_A	397_L	0.653	0.42
201_T	237_N	0.652	0.42
106_G	365_N	0.650	0.42
101_L	158_L	0.650	0.42
44_Q	55_D	0.649	0.42
214_E	233_E	0.646	0.42
409_Y	427_K	0.646	0.42
432_G	435_W	0.643	0.42
68_I	339_L	0.643	0.42
88_M	389_R	0.642	0.41
183_P	252_L	0.642	0.41
128_N	318_K	0.642	0.41
388_D	437_E	0.642	0.41
187_E	215_K	0.640	0.41
361_D	441_P	0.639	0.41
87_R	96_L	0.638	0.41
228_K	231_A	0.638	0.41
80_E	313_N	0.638	0.41
168_N	397_L	0.636	0.41
133_V	379_S	0.635	0.41
384_L	392_V	0.635	0.41
59_L	432_G	0.635	0.41
173_A	391_A	0.634	0.41
117_M	158_L	0.633	0.41
133_V	310_W	0.632	0.41
188_L	226_F	0.631	0.40
74_T	78_A	0.631	0.40
154_D	304_K	0.626	0.40
319_Q	429_Q	0.624	0.40
360_L	371_V	0.623	0.40
65_G	255_R	0.622	0.40
94_E	113_S	0.621	0.40
247_M	296_W	0.621	0.40
148_E	346_Q	0.620	0.39
74_T	140_V	0.616	0.39
81_I	297_V	0.616	0.39
174_A	186_A	0.615	0.39
245_Y	249_M	0.614	0.39
197_S	200_V	0.613	0.39
130_I	158_L	0.612	0.39
219_N	224_I	0.612	0.39
105_S	132_A	0.610	0.38
309_V	412_R	0.609	0.38
132_A	136_T	0.609	0.38
250_H	255_R	0.609	0.38
145_Y	158_L	0.608	0.38
58_F	434_I	0.607	0.38
314_Y	325_K	0.606	0.38
121_T	191_Q	0.605	0.38
101_L	120_L	0.605	0.38
40_E	388_D	0.604	0.38
108_P	381_E	0.604	0.38
241_E	304_K	0.603	0.38
93_H	155_P	0.603	0.38
267_M	307_I	0.602	0.38
113_S	125_T	0.602	0.38
98_Y	311_G	0.601	0.38
364_D	443_V	0.600	0.38
203_S	264_L	0.600	0.38
88_M	386_A	0.599	0.37
64_K	98_Y	0.597	0.37
383_L	389_R	0.596	0.37
426_L	430_Y	0.594	0.37
61_K	344_K	0.592	0.37
84_T	434_I	0.592	0.37
360_L	429_Q	0.591	0.37
46_L	55_D	0.590	0.37
162_D	313_N	0.590	0.37
414_A	429_Q	0.588	0.37
354_A	359_S	0.585	0.36
82_N	310_W	0.583	0.36
60_K	432_G	0.581	0.36
111_N	435_W	0.581	0.36
132_A	310_W	0.580	0.36
361_D	418_G	0.579	0.36
112_A	239_P	0.578	0.36
122_P	125_T	0.578	0.36
75_T	78_A	0.578	0.36
86_V	101_L	0.578	0.36
212_K	226_F	0.578	0.36
161_F	339_L	0.577	0.36
378_G	421_E	0.577	0.36
76_H	287_D	0.577	0.36
88_M	439_I	0.576	0.35
89_I	149_Q	0.575	0.35
41_R	370_P	0.574	0.35
140_V	396_F	0.573	0.35
42_H	45_P	0.573	0.35
73_E	287_D	0.573	0.35
66_K	98_Y	0.572	0.35
43_A	48_A	0.572	0.35
262_Y	337_D	0.572	0.35
41_R	356_S	0.571	0.35
290_M	381_E	0.571	0.35
130_I	419_Y	0.569	0.35
173_A	184_E	0.569	0.35
207_D	210_S	0.568	0.35
236_E	425_I	0.568	0.35
104_E	287_D	0.567	0.35
338_Y	419_Y	0.566	0.35
141_E	245_Y	0.566	0.35
181_V	363_S	0.565	0.34
179_K	190_S	0.565	0.34
162_D	315_H	0.565	0.34
238_L	241_E	0.565	0.34
65_G	236_E	0.565	0.34
80_E	83_A	0.561	0.34
180_A	191_Q	0.560	0.34
239_P	308_I	0.559	0.34
378_G	440_T	0.558	0.34
288_R	375_P	0.557	0.34
94_E	97_G	0.555	0.34
46_L	49_S	0.555	0.34
39_I	269_E	0.555	0.34
269_E	279_E	0.555	0.34
77_G	106_G	0.554	0.34
149_Q	354_A	0.553	0.33
133_V	136_T	0.552	0.33
49_S	56_L	0.552	0.33
354_A	439_I	0.551	0.33
117_M	150_K	0.549	0.33
67_R	122_P	0.548	0.33
168_N	249_M	0.548	0.33
136_T	263_M	0.547	0.33
319_Q	340_P	0.546	0.33
134_W	352_I	0.544	0.33
415_L	419_Y	0.544	0.33
163_I	392_V	0.544	0.33
77_G	314_Y	0.543	0.33
124_S	235_K	0.541	0.32
299_D	345_K	0.541	0.32
224_I	259_M	0.540	0.32
282_S	334_N	0.539	0.32
176_Q	428_E	0.539	0.32
55_D	396_F	0.539	0.32
182_D	185_K	0.538	0.32
185_K	188_L	0.537	0.32
53_N	156_L	0.536	0.32
357_G	379_S	0.536	0.32
122_P	292_E	0.536	0.32
312_H	426_L	0.535	0.32
84_T	352_I	0.535	0.32
284_F	331_N	0.534	0.32
304_K	371_V	0.533	0.32
117_M	145_Y	0.532	0.32
311_G	408_M	0.532	0.32
145_Y	155_P	0.531	0.32
103_F	335_M	0.531	0.32
78_A	359_S	0.531	0.32
221_Q	366_K	0.530	0.31
108_P	312_H	0.530	0.31
292_E	295_Q	0.528	0.31
228_K	253_Q	0.526	0.31
71_L	300_T	0.526	0.31
125_T	128_N	0.524	0.31
119_Q	377_S	0.524	0.31
71_L	378_G	0.523	0.31
93_H	101_L	0.521	0.31
375_P	381_E	0.521	0.31
318_K	337_D	0.521	0.31
140_V	436_L	0.521	0.31
253_Q	397_L	0.519	0.31
79_G	116_N	0.519	0.31
403_K	406_S	0.518	0.30
132_A	259_M	0.517	0.30
394_V	397_L	0.514	0.30
148_E	428_E	0.514	0.30
55_D	342_R	0.512	0.30
176_Q	184_E	0.511	0.30
240_K	438_H	0.511	0.30
47_D	232_S	0.510	0.30
377_S	434_I	0.508	0.30
155_P	304_K	0.508	0.30
83_A	90_K	0.508	0.30
40_E	44_Q	0.507	0.30
93_H	358_A	0.506	0.30
54_K	58_F	0.506	0.30
304_K	378_G	0.505	0.29
192_S	267_M	0.505	0.29
81_I	108_P	0.504	0.29
156_L	363_S	0.504	0.29
235_K	245_Y	0.503	0.29
85_K	134_W	0.503	0.29
167_K	170_F	0.502	0.29
72_G	431_D	0.502	0.29
319_Q	372_T	0.501	0.29
177_W	234_L	0.501	0.29
405_T	409_Y	0.501	0.29
360_L	430_Y	0.500	0.29
439_I	442_S	0.500	0.29
141_E	443_V	0.500	0.29
39_I	42_H	0.500	0.29

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2qgmA	1	0.8475	100	0.273	Contact Map
3b55A	1	0.8722	100	0.304	Contact Map
2g5gX	1	0.5448	97.7	0.923	Contact Map
2jnaA	2	0.2085	81.1	0.957	Contact Map
2nocA	1	0.1996	59.9	0.964	Contact Map
4jggA	1	0.3924	58.9	0.964	Contact Map
2hdwA	2	0.5381	43.2	0.967	Contact Map
3oa8B	3	0.3386	43.1	0.967	Contact Map
4pj0V	1	0.2511	41.7	0.967	Contact Map
2hnaA	1	0.3184	28.2	0.97	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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