YHDT - BACSU - GREMLIN Contacts

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YHDT - UPF0053 protein YhdT

UniProt:	O07589	Sequences: MDDIDSLILIGVLIALTAFFVASEFAIVRVRRSRIDQLITEGNKRAILARRVITDLDEYLSASQLGITLTSIGLGVLGEPAFERLLHPLFEPLGLPDSVSHAVSFAVAYGLITFLHVVVGELAPKTVAIQKAEQLTLLIAGPLRLFYLLLFPFIWILNGSARLLCGMFGLKPASEHDGSHSEEELRMLLSESLKNGEINPSEYKYVNKIFEFDNRIAKEIMIPRKEMAAVSTEMTMAEMLEVMLKEKYTRWPVTDGDKDSVLGLVNTKHLFSDLLFMTEEERMKMTIHPYVRPVIEVIETIPVHDLLIKMQRERIHMAILSDEYGGTSGLVTTEDILEEIVGEIRDEFDEDEQPLIQKLGDGHYVMDGKVRIDQVNSLLGASIQEDVDTIGGLILKENIDIEAGESIRIGSYTIKVLKMDGRLIKQIDIKEEAGNTTGITAHHKLPLPEPVMLNSATLSEK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	461 (412)
Sequences:	6975 (4697)
Seq/√Len:	231.4

ECOLI - YTFL YFJD YEGH YOAE CORC
BACSU - YHDT YHDP YUGS YRKA YQHB
HALSA - Q9HN02 Q9HHN9 Q9HRX1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
227_M	330_L	4.220	1.00
400_D	405_E	3.988	1.00
366_M	429_I	3.914	1.00
408_R	413_T	3.413	1.00
406_S	413_T	3.404	1.00
406_S	415_K	3.377	1.00
394_I	427_I	3.157	1.00
255_D	260_S	3.098	1.00
365_V	417_L	3.003	1.00
235_T	238_E	2.971	1.00
229_A	254_T	2.837	1.00
286_T	289_P	2.830	1.00
297_V	306_L	2.828	1.00
255_D	288_H	2.823	1.00
360_G	363_H	2.773	1.00
269_H	292_R	2.765	1.00
415_K	430_K	2.739	1.00
131_K	134_Q	2.736	1.00
234_M	238_E	2.724	1.00
413_T	430_K	2.640	1.00
253_V	291_V	2.620	1.00
365_V	426_Q	2.593	1.00
319_I	330_L	2.561	1.00
114_F	160_S	2.479	1.00
413_T	432_E	2.434	1.00
144_R	148_L	2.432	1.00
375_V	379_L	2.310	1.00
232_T	255_D	2.305	1.00
227_M	327_T	2.268	1.00
301_I	309_K	2.259	1.00
155_W	159_G	2.247	1.00
35_I	49_A	2.211	1.00
217_A	306_L	2.189	1.00
393_L	409_I	2.186	1.00
417_L	428_D	2.167	1.00
359_L	363_H	2.126	1.00
390_I	427_I	2.089	1.00
319_I	327_T	2.085	1.00
48_L	144_R	2.020	1.00
363_H	428_D	1.998	1.00
19_F	142_P	1.981	1.00
418_K	426_Q	1.967	1.00
229_A	258_K	1.929	1.00
375_V	429_I	1.925	1.00
17_T	71_S	1.914	1.00
58_E	151_F	1.897	1.00
220_I	303_V	1.893	1.00
232_T	288_H	1.884	1.00
163_L	167_M	1.872	1.00
38_L	137_L	1.868	1.00
230_V	239_M	1.857	1.00
370_V	375_V	1.856	1.00
306_L	331_V	1.845	1.00
48_L	141_G	1.839	1.00
363_H	430_K	1.834	1.00
138_L	142_P	1.810	1.00
356_I	370_V	1.796	1.00
420_D	425_K	1.792	1.00
51_R	144_R	1.760	1.00
230_V	253_V	1.753	1.00
232_T	262_L	1.752	1.00
189_L	206_V	1.744	1.00
264_L	294_V	1.734	1.00
34_R	133_E	1.720	1.00
241_E	245_K	1.711	1.00
43_N	137_L	1.704	1.00
418_K	425_K	1.703	1.00
39_I	50_R	1.695	1.00
370_V	390_I	1.678	1.00
358_K	364_Y	1.661	1.00
365_V	428_D	1.659	1.00
317_M	330_L	1.649	1.00
234_M	239_M	1.649	1.00
233_E	255_D	1.635	1.00
375_V	390_I	1.628	1.00
48_L	140_A	1.624	1.00
254_T	261_V	1.595	1.00
415_K	428_D	1.592	1.00
359_L	365_V	1.574	1.00
334_E	338_E	1.571	1.00
366_M	390_I	1.570	1.00
259_D	326_G	1.567	1.00
358_K	361_D	1.567	1.00
220_I	331_V	1.561	1.00
228_A	242_V	1.560	1.00
249_T	266_N	1.555	1.00
205_Y	209_I	1.554	1.00
23_S	139_I	1.549	1.00
359_L	428_D	1.546	1.00
395_L	424_I	1.546	1.00
414_I	427_I	1.541	1.00
394_I	414_I	1.533	1.00
205_Y	340_I	1.508	1.00
17_T	67_I	1.507	1.00
337_L	341_V	1.504	1.00
411_S	432_E	1.498	1.00
394_I	416_V	1.494	1.00
376_N	381_A	1.490	1.00
412_Y	431_E	1.455	1.00
159_G	163_L	1.446	1.00
134_Q	138_L	1.440	1.00
366_M	375_V	1.433	1.00
215_R	219_E	1.430	1.00
408_R	432_E	1.422	1.00
308_I	311_Q	1.422	1.00
299_E	328_S	1.409	1.00
36_D	40_T	1.387	1.00
9_L	77_L	1.385	1.00
7_L	11_G	1.375	1.00
303_V	336_I	1.375	1.00
264_L	317_M	1.374	1.00
228_A	248_Y	1.373	1.00
47_I	51_R	1.362	1.00
257_D	260_S	1.362	1.00
255_D	262_L	1.360	1.00
409_I	414_I	1.360	1.00
209_I	340_I	1.352	1.00
36_D	50_R	1.349	1.00
8_I	12_V	1.347	1.00
62_A	146_F	1.345	1.00
301_I	306_L	1.343	1.00
49_A	140_A	1.318	1.00
387_V	396_K	1.316	1.00
231_S	234_M	1.310	1.00
22_A	135_L	1.301	1.00
411_S	431_E	1.294	1.00
238_E	241_E	1.289	1.00
417_L	426_Q	1.280	1.00
394_I	398_N	1.280	1.00
412_Y	429_I	1.279	1.00
394_I	407_I	1.278	1.00
38_L	43_N	1.277	1.00
148_L	151_F	1.271	1.00
359_L	362_G	1.270	1.00
19_F	139_I	1.270	1.00
142_P	145_L	1.268	1.00
45_R	137_L	1.264	1.00
250_R	316_H	1.263	1.00
346_D	349_D	1.263	1.00
50_R	54_T	1.257	1.00
42_G	46_A	1.256	1.00
362_G	431_E	1.247	1.00
317_M	332_T	1.246	1.00
78_G	112_I	1.246	1.00
106_A	110_G	1.240	1.00
100_S	104_S	1.239	1.00
123_A	164_L	1.237	1.00
225_K	326_G	1.236	1.00
43_N	46_A	1.230	1.00
397_E	409_I	1.225	1.00
356_I	378_L	1.225	1.00
372_I	376_N	1.224	1.00
72_I	75_G	1.220	1.00
45_R	141_G	1.217	1.00
62_A	154_I	1.212	1.00
141_G	145_L	1.200	1.00
224_R	259_D	1.199	1.00
139_I	142_P	1.195	1.00
228_A	246_E	1.177	1.00
49_A	136_T	1.173	1.00
357_Q	365_V	1.168	1.00
285_M	289_P	1.150	1.00
309_K	313_E	1.148	1.00
12_V	16_L	1.146	1.00
127_V	170_L	1.142	1.00
159_G	162_R	1.137	1.00
20_F	66_G	1.133	1.00
25_F	28_V	1.130	1.00
261_V	319_I	1.120	1.00
234_M	242_V	1.114	1.00
355_L	367_D	1.110	1.00
246_E	251_W	1.109	1.00
20_F	146_F	1.097	1.00
226_E	423_L	1.096	1.00
39_I	47_I	1.095	1.00
334_E	344_I	1.093	1.00
231_S	256_G	1.093	1.00
228_A	251_W	1.091	1.00
35_I	50_R	1.086	1.00
298_I	301_I	1.079	1.00
5_D	9_L	1.079	1.00
102_A	106_A	1.078	1.00
151_F	155_W	1.076	1.00
368_G	390_I	1.075	1.00
67_I	71_S	1.073	1.00
64_Q	67_I	1.073	1.00
344_I	349_D	1.068	1.00
376_N	383_I	1.067	1.00
220_I	336_I	1.065	1.00
379_L	412_Y	1.064	1.00
414_I	429_I	1.062	1.00
224_R	326_G	1.057	1.00
71_S	116_H	1.046	1.00
391_G	395_L	1.037	1.00
407_I	414_I	1.037	1.00
294_V	319_I	1.037	1.00
265_V	290_Y	1.034	1.00
30_V	35_I	1.028	1.00
250_R	334_E	1.024	1.00
259_D	327_T	1.023	1.00
17_T	21_V	1.023	1.00
229_A	327_T	1.022	1.00
21_V	25_F	1.015	1.00
262_L	291_V	1.012	1.00
356_I	366_M	1.006	1.00
217_A	297_V	1.003	1.00
52_V	59_Y	1.002	1.00
408_R	411_S	1.000	1.00
356_I	364_Y	0.994	1.00
120_G	125_K	0.993	1.00
44_K	47_I	0.992	1.00
398_N	407_I	0.990	1.00
393_L	414_I	0.988	1.00
192_S	196_G	0.986	1.00
395_L	401_I	0.981	1.00
163_L	166_G	0.974	1.00
376_N	382_S	0.974	1.00
367_D	426_Q	0.971	1.00
230_V	287_I	0.970	1.00
217_A	320_L	0.969	1.00
193_L	203_Y	0.969	1.00
30_V	132_A	0.967	1.00
243_M	251_W	0.959	1.00
232_T	291_V	0.959	1.00
244_L	276_F	0.953	1.00
322_D	325_G	0.952	1.00
240_L	244_L	0.951	1.00
231_S	254_T	0.951	1.00
166_G	171_K	0.944	1.00
256_G	260_S	0.944	1.00
23_S	143_L	0.940	1.00
14_I	120_G	0.938	1.00
403_A	418_K	0.936	1.00
104_S	108_A	0.932	1.00
297_V	318_A	0.922	1.00
180_H	188_L	0.921	1.00
24_E	125_K	0.918	1.00
10_I	112_I	0.917	1.00
334_E	349_D	0.916	1.00
171_K	174_S	0.916	1.00
310_M	318_A	0.913	1.00
121_E	125_K	0.912	1.00
76_V	109_Y	0.908	1.00
76_V	79_E	0.908	1.00
371_R	374_Q	0.907	1.00
156_I	159_G	0.907	1.00
269_H	348_F	0.905	1.00
285_M	290_Y	0.900	0.99
301_I	305_D	0.898	0.99
145_L	148_L	0.896	0.99
35_I	53_I	0.892	0.99
383_I	393_L	0.891	0.99
233_E	288_H	0.890	0.99
241_E	244_L	0.886	0.99
397_E	407_I	0.886	0.99
295_I	309_K	0.880	0.99
237_A	241_E	0.876	0.99
55_D	58_E	0.873	0.99
162_R	166_G	0.870	0.99
393_L	397_E	0.870	0.99
110_G	114_F	0.870	0.99
16_L	70_T	0.868	0.99
147_Y	151_F	0.868	0.99
17_T	116_H	0.866	0.99
236_M	239_M	0.865	0.99
79_E	108_A	0.861	0.99
345_R	352_E	0.859	0.99
322_D	328_S	0.856	0.99
391_G	423_L	0.854	0.99
316_H	337_L	0.851	0.99
185_L	192_S	0.850	0.99
37_Q	41_E	0.847	0.99
10_I	74_L	0.846	0.99
68_T	113_T	0.846	0.99
226_E	369_K	0.846	0.99
182_E	214_N	0.845	0.99
67_I	121_E	0.844	0.99
10_I	81_A	0.843	0.99
51_R	55_D	0.841	0.99
45_R	49_A	0.840	0.99
266_N	269_H	0.840	0.99
217_A	331_V	0.839	0.99
83_E	104_S	0.837	0.99
48_L	51_R	0.837	0.99
74_L	112_I	0.835	0.99
368_G	391_G	0.832	0.99
72_I	109_Y	0.832	0.99
9_L	12_V	0.831	0.99
218_K	299_E	0.827	0.99
323_E	392_G	0.823	0.99
230_V	251_W	0.823	0.99
236_M	285_M	0.820	0.99
78_G	82_F	0.818	0.99
138_L	141_G	0.818	0.99
22_A	128_A	0.813	0.99
283_M	286_T	0.811	0.99
384_Q	387_V	0.811	0.99
67_I	116_H	0.803	0.99
64_Q	68_T	0.802	0.99
334_E	347_E	0.801	0.99
52_V	140_A	0.801	0.99
358_K	362_G	0.801	0.99
338_E	343_E	0.800	0.99
182_E	210_F	0.800	0.99
68_T	116_H	0.798	0.99
288_H	291_V	0.795	0.99
17_T	70_T	0.790	0.99
295_I	318_A	0.788	0.99
75_G	78_G	0.785	0.99
372_I	383_I	0.784	0.99
165_C	170_L	0.784	0.99
141_G	144_R	0.782	0.99
252_P	264_L	0.782	0.99
122_L	157_L	0.781	0.99
297_V	320_L	0.778	0.98
75_G	79_E	0.775	0.98
185_L	198_I	0.774	0.98
227_M	258_K	0.772	0.98
32_R	54_T	0.769	0.98
368_G	424_I	0.768	0.98
15_A	18_A	0.768	0.98
232_T	239_M	0.766	0.98
18_A	22_A	0.764	0.98
46_A	137_L	0.761	0.98
334_E	339_E	0.761	0.98
262_L	288_H	0.759	0.98
103_V	107_V	0.759	0.98
135_L	139_I	0.759	0.98
39_I	42_G	0.756	0.98
212_F	336_I	0.755	0.98
64_Q	71_S	0.752	0.98
387_V	393_L	0.752	0.98
22_A	26_A	0.751	0.98
72_I	113_T	0.750	0.98
17_T	68_T	0.749	0.98
9_L	13_L	0.748	0.98
136_T	140_A	0.747	0.98
367_D	370_V	0.746	0.98
63_S	143_L	0.746	0.98
230_V	242_V	0.742	0.98
250_R	266_N	0.738	0.98
74_L	116_H	0.738	0.98
30_V	49_A	0.735	0.98
34_R	38_L	0.733	0.98
243_M	270_L	0.731	0.98
334_E	343_E	0.729	0.98
403_A	419_M	0.728	0.98
212_F	307_L	0.727	0.98
67_I	122_L	0.727	0.98
218_K	328_S	0.727	0.98
38_L	41_E	0.726	0.98
282_R	285_M	0.724	0.98
62_A	147_Y	0.722	0.98
252_P	319_I	0.722	0.98
253_V	287_I	0.721	0.98
45_R	138_L	0.721	0.98
205_Y	212_F	0.721	0.98
243_M	267_T	0.717	0.97
152_P	156_I	0.716	0.97
182_E	186_R	0.715	0.97
64_Q	75_G	0.714	0.97
34_R	37_Q	0.713	0.97
298_I	323_E	0.712	0.97
57_D	126_T	0.711	0.97
356_I	375_V	0.710	0.97
21_V	121_E	0.708	0.97
316_H	334_E	0.705	0.97
372_I	387_V	0.704	0.97
14_I	17_T	0.704	0.97
67_I	70_T	0.702	0.97
357_Q	426_Q	0.702	0.97
68_T	125_K	0.702	0.97
381_A	412_Y	0.700	0.97
35_I	46_A	0.699	0.97
250_R	347_E	0.698	0.97
119_V	164_L	0.697	0.97
39_I	43_N	0.695	0.97
70_T	113_T	0.693	0.97
242_V	245_K	0.692	0.97
14_I	115_L	0.691	0.97
338_E	349_D	0.690	0.97
277_M	282_R	0.688	0.97
401_I	419_M	0.688	0.97
359_L	418_K	0.687	0.97
224_R	322_D	0.685	0.97
17_T	64_Q	0.685	0.97
345_R	351_D	0.684	0.97
333_T	344_I	0.683	0.97
307_L	336_I	0.682	0.97
344_I	347_E	0.681	0.97
26_A	136_T	0.681	0.97
75_G	113_T	0.680	0.96
254_T	257_D	0.679	0.96
19_F	66_G	0.678	0.96
309_K	312_R	0.677	0.96
402_E	405_E	0.677	0.96
339_E	343_E	0.676	0.96
21_V	116_H	0.674	0.96
5_D	8_I	0.673	0.96
171_K	175_E	0.673	0.96
232_T	235_T	0.673	0.96
250_R	317_M	0.673	0.96
252_P	261_V	0.671	0.96
294_V	317_M	0.670	0.96
306_L	336_I	0.670	0.96
287_I	291_V	0.669	0.96
16_L	20_F	0.668	0.96
398_N	405_E	0.665	0.96
249_T	268_K	0.664	0.96
266_N	292_R	0.664	0.96
295_I	313_E	0.664	0.96
14_I	74_L	0.663	0.96
79_E	83_E	0.662	0.96
72_I	79_E	0.661	0.96
65_L	153_F	0.660	0.96
56_L	59_Y	0.656	0.96
217_A	301_I	0.654	0.96
25_F	128_A	0.654	0.96
204_K	208_K	0.653	0.96
355_L	370_V	0.652	0.96
212_F	304_H	0.650	0.95
24_E	121_E	0.650	0.95
145_L	149_L	0.650	0.95
239_M	243_M	0.647	0.95
334_E	346_D	0.647	0.95
45_R	48_L	0.647	0.95
76_V	105_F	0.647	0.95
52_V	147_Y	0.646	0.95
13_L	73_G	0.646	0.95
82_F	108_A	0.645	0.95
239_M	287_I	0.643	0.95
75_G	109_Y	0.641	0.95
261_V	327_T	0.641	0.95
206_V	210_F	0.639	0.95
38_L	46_A	0.639	0.95
391_G	424_I	0.637	0.95
47_I	50_R	0.636	0.95
334_E	348_F	0.633	0.95
254_T	258_K	0.632	0.95
386_D	396_K	0.630	0.95
67_I	120_G	0.630	0.95
216_I	219_E	0.627	0.94
382_S	410_G	0.625	0.94
230_V	234_M	0.622	0.94
358_K	363_H	0.622	0.94
375_V	378_L	0.621	0.94
70_T	109_Y	0.620	0.94
41_E	46_A	0.619	0.94
57_D	162_R	0.618	0.94
25_F	64_Q	0.614	0.94
239_M	286_T	0.612	0.94
73_G	105_F	0.612	0.94
222_I	345_R	0.611	0.94
186_R	207_N	0.609	0.94
39_I	45_R	0.609	0.94
182_E	213_D	0.608	0.94
261_V	296_E	0.607	0.93
64_Q	116_H	0.606	0.93
252_P	388_D	0.604	0.93
68_T	109_Y	0.603	0.93
393_L	407_I	0.603	0.93
322_D	326_G	0.603	0.93
153_F	157_L	0.603	0.93
307_L	333_T	0.602	0.93
275_L	285_M	0.602	0.93
23_S	27_I	0.602	0.93
362_G	433_A	0.598	0.93
244_L	272_S	0.598	0.93
71_S	122_L	0.597	0.93
30_V	59_Y	0.594	0.93
21_V	71_S	0.594	0.93
295_I	315_I	0.594	0.93
57_D	61_S	0.593	0.93
218_K	388_D	0.591	0.93
203_Y	207_N	0.591	0.93
82_F	110_G	0.589	0.92
60_L	64_Q	0.588	0.92
24_E	68_T	0.588	0.92
219_E	388_D	0.588	0.92
132_A	135_L	0.587	0.92
58_E	147_Y	0.586	0.92
224_R	323_E	0.585	0.92
45_R	140_A	0.584	0.92
83_E	101_H	0.584	0.92
333_T	341_V	0.583	0.92
21_V	67_I	0.583	0.92
157_L	161_A	0.583	0.92
64_Q	122_L	0.581	0.92
126_T	129_I	0.580	0.92
238_E	242_V	0.580	0.92
60_L	120_G	0.579	0.92
341_V	344_I	0.579	0.92
419_M	422_R	0.579	0.92
344_I	348_F	0.578	0.92
79_E	117_V	0.577	0.92
72_I	108_A	0.577	0.92
152_P	155_W	0.575	0.92
6_S	10_I	0.575	0.92
32_R	50_R	0.575	0.92
338_E	346_D	0.574	0.91
378_L	381_A	0.572	0.91
105_F	109_Y	0.571	0.91
76_V	112_I	0.571	0.91
30_V	133_E	0.570	0.91
219_E	395_L	0.569	0.91
63_S	70_T	0.568	0.91
384_Q	397_E	0.568	0.91
73_G	77_L	0.565	0.91
59_Y	65_L	0.565	0.91
359_L	425_K	0.564	0.91
397_E	410_G	0.563	0.91
249_T	346_D	0.563	0.91
28_V	61_S	0.562	0.91
21_V	68_T	0.561	0.91
113_T	117_V	0.561	0.91
150_L	153_F	0.561	0.91
17_T	113_T	0.561	0.91
307_L	341_V	0.558	0.90
44_K	141_G	0.557	0.90
366_M	379_L	0.556	0.90
127_V	131_K	0.555	0.90
55_D	147_Y	0.554	0.90
70_T	74_L	0.553	0.90
192_S	198_I	0.552	0.90
98_S	102_A	0.552	0.90
97_D	101_H	0.551	0.90
424_I	427_I	0.551	0.90
338_E	344_I	0.550	0.90
63_S	109_Y	0.550	0.90
68_T	71_S	0.549	0.90
316_H	344_I	0.549	0.90
60_L	125_K	0.547	0.89
149_L	152_P	0.547	0.89
130_Q	170_L	0.547	0.89
51_R	54_T	0.546	0.89
13_L	70_T	0.545	0.89
237_A	284_K	0.545	0.89
372_I	390_I	0.544	0.89
292_R	315_I	0.543	0.89
7_L	81_A	0.543	0.89
372_I	375_V	0.543	0.89
33_S	187_M	0.543	0.89
334_E	341_V	0.542	0.89
192_S	197_E	0.542	0.89
29_R	129_I	0.542	0.89
362_G	430_K	0.541	0.89
71_S	109_Y	0.541	0.89
25_F	65_L	0.540	0.89
49_A	53_I	0.539	0.89
338_E	347_E	0.537	0.89
158_N	161_A	0.537	0.89
224_R	325_G	0.536	0.88
78_G	104_S	0.535	0.88
364_Y	379_L	0.534	0.88
213_D	304_H	0.533	0.88
242_V	246_E	0.533	0.88
267_T	271_F	0.532	0.88
259_D	323_E	0.531	0.88
65_L	113_T	0.531	0.88
298_I	321_S	0.531	0.88
34_R	46_A	0.530	0.88
189_L	198_I	0.530	0.88
208_K	340_I	0.529	0.88
190_S	207_N	0.529	0.88
103_V	106_A	0.529	0.88
379_L	429_I	0.528	0.88
296_E	321_S	0.527	0.88
75_G	80_P	0.525	0.87
228_A	245_K	0.525	0.87
98_S	101_H	0.525	0.87
210_F	213_D	0.524	0.87
249_T	347_E	0.524	0.87
27_I	136_T	0.524	0.87
79_E	113_T	0.523	0.87
299_E	340_I	0.523	0.87
405_E	424_I	0.523	0.87
308_I	312_R	0.523	0.87
134_Q	137_L	0.523	0.87
236_M	240_L	0.523	0.87
366_M	427_I	0.522	0.87
61_S	68_T	0.521	0.87
364_Y	378_L	0.521	0.87
291_V	294_V	0.521	0.87
30_V	38_L	0.520	0.87
376_N	384_Q	0.520	0.87
56_L	109_Y	0.519	0.87
76_V	80_P	0.519	0.87
51_R	148_L	0.519	0.87
72_I	76_V	0.518	0.87
301_I	320_L	0.517	0.87
289_P	293_P	0.516	0.87
68_T	122_L	0.515	0.86
370_V	374_Q	0.514	0.86
395_L	405_E	0.512	0.86
46_A	136_T	0.512	0.86
68_T	121_E	0.511	0.86
343_E	346_D	0.511	0.86
373_D	377_S	0.510	0.86
146_F	150_L	0.509	0.86
241_E	276_F	0.509	0.86
21_V	63_S	0.508	0.86
224_R	324_Y	0.507	0.86
249_T	316_H	0.507	0.86
254_T	262_L	0.507	0.86
358_K	431_E	0.505	0.85
75_G	117_V	0.505	0.85
109_Y	116_H	0.505	0.85
425_K	428_D	0.504	0.85
29_R	59_Y	0.504	0.85
324_Y	392_G	0.504	0.85
60_L	121_E	0.504	0.85
186_R	211_E	0.504	0.85
30_V	137_L	0.503	0.85
374_Q	378_L	0.501	0.85
189_L	207_N	0.501	0.85
191_E	198_I	0.501	0.85
337_L	344_I	0.500	0.85
250_R	346_D	0.500	0.85

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4hg0A	2	0.4989	100	0.536	Contact Map
3lhhA	1	0.2711	100	0.775	Contact Map
3ocoA	2	0.2928	99.9	0.79	Contact Map
3oi8A	2	0.3384	99.9	0.793	Contact Map
3ocmA	5	0.3232	99.9	0.797	Contact Map
3kxrA	3	0.3492	99.9	0.801	Contact Map
2v8qE	1	0.5488	99.9	0.802	Contact Map
3lv9A	2	0.282	99.9	0.806	Contact Map
4iysA	2	0.308	99.9	0.813	Contact Map
3t4nC	1	0.5423	99.9	0.824	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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