YHDP - BACSU - GREMLIN Contacts

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YHDP - UPF0053 protein YhdP

UniProt:	O07585	Sequences: MDIVNLILVAVLIALTAFFVASEFAIIRIRGSRIDQLIAEGNKAAIAVKKVTTHLDEYLSACQLGITLTSIGLGVLGESTIERLLHPLFVQMNVPGSLSHVISFIFAYAIITFLHVVVGELAPKTVAIQKAEAVSMLFAKPLIWFYRIAFPFIWLLNNSARLLTKAFGLETVSENELAHSEEELRIILSESYKSGEINQSEFKYVNKIFEFDDRLAKEIMIPRTEIVSLPHDIKISEMMDIIQIEKYTRYPVEEGDKDNIIGVINIKEVLTACISGEVSVDSTISQFVNPIIHVIESAPIQDLLVKMQKERVHMAILSDEYGGTAGLVTVEDIIEEIVGEIRDEFDIDEISEIRKIGEGHYILDGKVLIDQVNDLLGIHLENEEVDTIGGWFLTQKYDVEKDDSIIEEGCEFIINEIDGHHVAYIEVKKLQEEELLETANQQEA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	444 (411)
Sequences:	7853 (5090)
Seq/√Len:	251.1

ECOLI - YTFL YFJD YEGH YOAE CORC
BACSU - YHDP YUGS YHDT YRKA YQHB
HALSA - Q9HHN9 Q9HN02 Q9HRX1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
226_I	327_L	4.095	1.00
398_D	403_D	3.857	1.00
363_L	427_V	3.778	1.00
406_I	411_E	3.253	1.00
254_E	259_N	3.210	1.00
404_S	411_E	3.154	1.00
294_V	303_L	3.152	1.00
404_S	413_I	3.111	1.00
392_F	425_I	2.971	1.00
234_K	237_E	2.952	1.00
362_I	415_N	2.865	1.00
233_I	237_E	2.855	1.00
268_E	289_N	2.794	1.00
228_S	253_E	2.758	1.00
254_E	285_S	2.749	1.00
357_G	360_H	2.738	1.00
413_I	428_K	2.674	1.00
411_E	428_K	2.607	1.00
130_K	133_A	2.597	1.00
216_A	303_L	2.566	1.00
283_T	286_Q	2.526	1.00
362_I	424_Y	2.473	1.00
252_V	288_V	2.471	1.00
143_I	147_R	2.444	1.00
154_W	158_N	2.425	1.00
316_I	327_L	2.362	1.00
298_A	306_K	2.348	1.00
113_F	159_S	2.330	1.00
411_E	430_L	2.319	1.00
231_H	254_E	2.296	1.00
372_V	376_L	2.281	1.00
226_I	324_T	2.230	1.00
34_I	48_V	2.230	1.00
391_W	407_E	2.165	1.00
16_T	70_S	2.123	1.00
228_S	257_K	2.100	1.00
18_F	141_P	2.093	1.00
316_I	324_T	2.085	1.00
229_L	238_M	2.080	1.00
47_A	143_I	2.078	1.00
415_N	426_E	2.055	1.00
162_L	166_A	2.054	1.00
388_I	425_I	2.031	1.00
356_I	360_H	2.021	1.00
303_L	328_V	1.986	1.00
263_V	291_I	1.975	1.00
47_A	140_K	1.970	1.00
231_H	261_I	1.954	1.00
33_R	132_E	1.945	1.00
416_E	424_Y	1.934	1.00
231_H	285_S	1.924	1.00
360_H	426_E	1.917	1.00
372_V	427_V	1.900	1.00
38_I	49_K	1.898	1.00
57_E	150_F	1.880	1.00
353_I	367_V	1.876	1.00
367_V	372_V	1.869	1.00
219_I	328_V	1.864	1.00
219_I	300_I	1.839	1.00
37_L	136_M	1.803	1.00
188_L	205_V	1.790	1.00
229_L	252_V	1.770	1.00
137_L	141_P	1.768	1.00
418_D	423_A	1.763	1.00
240_D	244_I	1.746	1.00
253_E	260_I	1.733	1.00
360_H	428_K	1.713	1.00
233_I	238_M	1.705	1.00
416_E	423_A	1.675	1.00
42_N	136_M	1.675	1.00
331_E	335_E	1.672	1.00
50_K	143_I	1.669	1.00
355_K	361_Y	1.666	1.00
214_R	218_E	1.635	1.00
314_M	327_L	1.626	1.00
158_N	162_L	1.594	1.00
367_V	388_I	1.584	1.00
372_V	388_I	1.567	1.00
413_I	426_E	1.564	1.00
373_N	378_I	1.561	1.00
362_I	426_E	1.555	1.00
208_I	337_I	1.552	1.00
305_V	308_Q	1.539	1.00
22_S	138_F	1.538	1.00
227_V	241_I	1.536	1.00
204_Y	208_I	1.531	1.00
248_T	265_N	1.527	1.00
232_D	254_E	1.523	1.00
363_L	388_I	1.516	1.00
356_I	426_E	1.499	1.00
412_F	425_I	1.494	1.00
16_T	66_I	1.491	1.00
409_G	430_L	1.489	1.00
47_A	139_A	1.489	1.00
224_T	323_G	1.483	1.00
392_F	412_F	1.473	1.00
227_V	247_Y	1.466	1.00
355_K	358_E	1.463	1.00
230_P	233_I	1.461	1.00
256_D	259_N	1.456	1.00
296_E	325_A	1.453	1.00
393_L	422_V	1.451	1.00
298_A	303_L	1.434	1.00
133_A	137_L	1.426	1.00
407_E	412_F	1.418	1.00
48_V	139_A	1.412	1.00
258_D	323_G	1.408	1.00
8_L	76_L	1.406	1.00
300_I	333_I	1.399	1.00
204_Y	337_I	1.392	1.00
35_D	49_K	1.384	1.00
334_I	338_V	1.383	1.00
356_I	359_G	1.382	1.00
61_A	145_F	1.368	1.00
7_I	11_V	1.361	1.00
105_I	109_A	1.354	1.00
406_I	430_L	1.354	1.00
263_V	314_M	1.353	1.00
410_C	429_K	1.344	1.00
147_R	150_F	1.341	1.00
356_I	362_I	1.339	1.00
254_E	261_I	1.328	1.00
392_F	414_I	1.328	1.00
21_A	134_V	1.325	1.00
41_G	45_A	1.315	1.00
35_D	39_A	1.310	1.00
363_L	372_V	1.310	1.00
6_L	10_A	1.308	1.00
223_R	258_D	1.304	1.00
37_L	42_N	1.303	1.00
392_F	405_I	1.303	1.00
249_R	313_H	1.299	1.00
385_V	394_T	1.291	1.00
71_I	74_G	1.289	1.00
415_N	424_Y	1.289	1.00
409_G	429_K	1.289	1.00
15_L	69_T	1.285	1.00
237_E	240_D	1.275	1.00
373_N	380_L	1.275	1.00
61_A	153_I	1.272	1.00
395_Q	407_E	1.265	1.00
150_F	154_W	1.260	1.00
44_A	136_M	1.259	1.00
343_D	346_D	1.250	1.00
77_G	111_I	1.240	1.00
46_I	50_K	1.237	1.00
227_V	245_E	1.224	1.00
138_F	141_P	1.223	1.00
295_I	298_A	1.218	1.00
49_K	53_T	1.212	1.00
101_V	105_I	1.208	1.00
410_C	427_V	1.207	1.00
48_V	135_S	1.207	1.00
19_F	65_G	1.201	1.00
314_M	329_T	1.199	1.00
392_F	396_K	1.197	1.00
245_E	250_Y	1.194	1.00
122_A	163_L	1.186	1.00
42_N	45_A	1.182	1.00
44_A	140_K	1.181	1.00
141_P	144_W	1.181	1.00
233_I	241_I	1.179	1.00
158_N	161_R	1.169	1.00
258_D	324_T	1.166	1.00
306_K	310_E	1.161	1.00
291_I	316_I	1.156	1.00
353_I	375_L	1.141	1.00
86_H	90_V	1.140	1.00
140_K	144_W	1.139	1.00
369_I	373_N	1.136	1.00
227_V	250_Y	1.135	1.00
18_F	138_F	1.131	1.00
66_I	70_S	1.131	1.00
19_F	145_F	1.129	1.00
272_A	287_F	1.119	1.00
216_A	294_V	1.116	1.00
260_I	316_I	1.109	1.00
38_I	46_I	1.106	1.00
359_G	429_K	1.106	1.00
341_I	346_D	1.101	1.00
24_F	27_I	1.099	1.00
223_R	323_G	1.097	1.00
70_S	115_H	1.097	1.00
126_V	169_L	1.095	1.00
354_R	362_I	1.087	1.00
216_A	317_L	1.083	1.00
34_I	49_K	1.076	1.00
376_L	410_C	1.063	1.00
228_S	324_T	1.062	1.00
264_I	287_F	1.062	1.00
9_V	73_L	1.062	1.00
63_Q	66_I	1.059	1.00
11_V	15_L	1.057	1.00
249_R	331_E	1.044	1.00
405_I	412_F	1.043	1.00
50_K	54_H	1.038	1.00
282_S	286_Q	1.032	1.00
191_S	195_G	1.029	1.00
331_E	341_I	1.025	1.00
43_K	46_I	1.022	1.00
9_V	111_I	1.019	1.00
34_I	52_T	1.012	1.00
44_A	48_V	1.010	1.00
225_E	421_H	1.007	1.00
294_V	315_A	1.001	1.00
16_T	20_V	0.992	1.00
389_G	393_L	0.986	1.00
119_G	124_K	0.982	1.00
236_S	240_D	0.982	1.00
23_E	124_K	0.978	1.00
393_L	399_V	0.976	1.00
179_H	187_I	0.972	1.00
352_E	364_D	0.970	1.00
365_G	388_I	0.970	1.00
230_P	255_G	0.968	1.00
406_I	409_G	0.968	1.00
294_V	317_L	0.967	1.00
373_N	379_H	0.963	1.00
353_I	363_L	0.960	1.00
219_I	333_I	0.958	1.00
192_Y	202_F	0.954	1.00
391_W	412_F	0.954	1.00
103_S	107_A	0.953	1.00
144_W	147_R	0.953	1.00
162_L	165_K	0.951	1.00
29_I	131_A	0.943	1.00
51_V	58_Y	0.942	1.00
261_I	288_V	0.940	1.00
412_F	427_V	0.938	1.00
231_H	288_V	0.937	1.00
155_L	158_N	0.936	1.00
353_I	361_Y	0.933	1.00
292_I	306_K	0.929	1.00
307_M	315_A	0.923	1.00
239_M	243_Q	0.919	1.00
364_D	424_Y	0.915	1.00
232_D	285_S	0.907	1.00
161_R	171_T	0.907	1.00
255_G	259_N	0.907	1.00
217_K	296_E	0.905	1.00
9_V	80_T	0.902	1.00
61_A	146_Y	0.899	1.00
29_I	34_I	0.895	1.00
21_A	127_A	0.894	1.00
20_V	24_F	0.891	1.00
226_I	257_K	0.888	1.00
184_L	191_S	0.887	1.00
396_K	405_I	0.886	1.00
389_G	421_H	0.885	1.00
71_I	112_T	0.885	1.00
13_I	114_L	0.882	1.00
395_Q	405_I	0.881	1.00
151_P	155_L	0.880	1.00
47_A	50_K	0.874	1.00
298_A	302_D	0.873	1.00
396_K	400_E	0.872	1.00
22_S	142_L	0.870	1.00
77_G	81_I	0.869	1.00
242_I	250_Y	0.867	0.99
251_P	260_I	0.867	0.99
211_F	304_L	0.867	0.99
342_R	349_E	0.866	0.99
240_D	243_Q	0.866	0.99
165_K	170_E	0.857	0.99
75_V	108_Y	0.857	0.99
285_S	288_V	0.855	0.99
368_L	371_Q	0.851	0.99
335_E	340_E	0.850	0.99
161_R	165_K	0.848	0.99
75_V	78_E	0.846	0.99
137_L	140_K	0.843	0.99
235_I	238_M	0.841	0.99
230_P	253_E	0.835	0.99
120_E	124_K	0.835	0.99
211_F	301_Q	0.834	0.99
54_H	57_E	0.831	0.99
45_A	136_M	0.830	0.99
146_Y	150_F	0.829	0.99
391_W	395_Q	0.827	0.99
21_A	25_A	0.821	0.99
78_E	107_A	0.817	0.99
229_L	250_Y	0.816	0.99
38_I	42_N	0.815	0.99
33_R	37_L	0.814	0.99
303_L	333_I	0.811	0.99
24_F	127_A	0.811	0.99
229_L	241_I	0.811	0.99
211_F	333_I	0.805	0.99
109_A	113_F	0.804	0.99
365_G	389_G	0.804	0.99
67_T	112_T	0.800	0.99
331_E	346_D	0.800	0.99
225_E	366_K	0.798	0.99
381_E	385_V	0.795	0.99
36_Q	40_E	0.788	0.99
18_F	65_G	0.788	0.99
102_I	106_F	0.787	0.99
313_H	334_I	0.787	0.99
62_C	142_L	0.786	0.99
319_D	325_A	0.782	0.99
240_D	274_I	0.781	0.99
63_Q	70_S	0.779	0.99
319_D	323_G	0.778	0.99
319_D	322_G	0.776	0.99
292_I	315_A	0.776	0.99
331_E	340_E	0.775	0.99
331_E	336_E	0.773	0.99
8_L	11_V	0.772	0.99
335_E	343_D	0.771	0.99
73_L	111_I	0.770	0.99
268_E	345_F	0.768	0.99
242_I	269_V	0.765	0.99
66_I	120_E	0.764	0.99
331_E	343_D	0.763	0.99
364_D	367_V	0.759	0.99
235_I	282_S	0.759	0.99
223_R	319_D	0.757	0.99
17_A	21_A	0.757	0.99
385_V	391_W	0.756	0.99
282_S	287_F	0.753	0.99
56_D	161_R	0.750	0.99
229_L	284_I	0.750	0.99
51_V	139_A	0.748	0.99
249_R	344_E	0.746	0.98
16_T	115_H	0.745	0.98
260_I	324_T	0.745	0.98
73_L	115_H	0.743	0.98
261_I	285_S	0.743	0.98
181_E	213_D	0.742	0.98
74_G	78_E	0.742	0.98
304_L	338_V	0.741	0.98
331_E	344_E	0.740	0.98
184_L	197_I	0.740	0.98
67_T	124_K	0.740	0.98
31_G	53_T	0.739	0.98
216_A	328_V	0.739	0.98
140_K	143_I	0.736	0.98
135_S	139_A	0.736	0.98
98_L	101_V	0.734	0.98
248_T	267_K	0.733	0.98
295_I	320_E	0.733	0.98
251_P	316_I	0.732	0.98
313_H	331_E	0.729	0.98
37_L	40_E	0.728	0.98
71_I	108_Y	0.725	0.98
66_I	115_H	0.725	0.98
284_I	288_V	0.725	0.98
231_H	238_M	0.723	0.98
164_T	169_L	0.721	0.98
90_V	96_G	0.720	0.98
320_E	390_G	0.720	0.98
365_G	422_V	0.718	0.98
217_K	325_A	0.718	0.98
216_A	298_A	0.715	0.98
181_E	185_R	0.715	0.98
121_L	156_L	0.715	0.98
265_N	268_E	0.714	0.98
34_I	45_A	0.713	0.98
56_D	125_T	0.712	0.98
399_V	417_I	0.712	0.98
64_L	152_F	0.711	0.98
63_Q	74_G	0.711	0.98
291_I	314_M	0.710	0.98
8_L	12_L	0.708	0.98
354_R	424_Y	0.708	0.98
44_A	47_A	0.708	0.98
66_I	121_L	0.708	0.98
253_E	256_D	0.706	0.98
33_R	36_Q	0.704	0.98
14_A	17_A	0.702	0.98
181_E	209_F	0.701	0.98
249_R	265_N	0.700	0.98
215_L	218_E	0.699	0.98
330_V	341_I	0.699	0.98
75_V	104_F	0.699	0.98
74_G	77_G	0.698	0.98
55_L	58_Y	0.696	0.98
12_L	72_G	0.696	0.98
229_L	242_I	0.696	0.98
355_K	359_G	0.696	0.98
66_I	69_T	0.696	0.98
164_T	168_G	0.695	0.98
134_V	138_F	0.693	0.98
395_Q	408_E	0.691	0.98
99_S	103_S	0.691	0.98
292_I	310_E	0.688	0.97
63_Q	67_T	0.688	0.97
59_L	119_G	0.686	0.97
145_F	149_A	0.685	0.97
16_T	67_T	0.684	0.97
29_I	132_E	0.684	0.97
353_I	372_V	0.684	0.97
369_I	380_L	0.681	0.97
396_K	403_D	0.680	0.97
223_R	321_Y	0.679	0.97
16_T	69_T	0.678	0.97
242_I	266_I	0.677	0.97
204_Y	211_F	0.675	0.97
13_I	119_G	0.673	0.97
181_E	212_D	0.673	0.97
227_V	244_I	0.670	0.97
378_I	410_C	0.670	0.97
369_I	385_V	0.670	0.97
335_E	346_D	0.668	0.97
238_M	242_I	0.666	0.97
221_I	342_R	0.666	0.97
202_F	206_N	0.665	0.97
66_I	119_G	0.665	0.97
241_I	244_I	0.664	0.97
13_I	73_L	0.663	0.97
74_G	112_T	0.663	0.97
341_I	344_E	0.663	0.97
380_L	391_W	0.662	0.97
67_T	115_H	0.662	0.97
207_K	337_I	0.661	0.97
87_P	90_V	0.661	0.97
71_I	78_E	0.659	0.97
118_V	163_L	0.659	0.97
336_E	340_E	0.659	0.97
379_H	408_E	0.659	0.97
249_R	314_M	0.656	0.97
205_V	209_F	0.655	0.97
273_C	276_G	0.655	0.97
306_K	309_K	0.654	0.97
29_I	48_V	0.654	0.97
51_V	146_Y	0.653	0.97
356_I	416_E	0.653	0.97
342_R	348_D	0.651	0.96
355_K	360_H	0.650	0.96
44_A	139_A	0.650	0.96
238_M	284_I	0.649	0.96
44_A	137_L	0.649	0.96
384_E	394_T	0.646	0.96
25_A	135_S	0.646	0.96
13_I	16_T	0.646	0.96
375_L	378_I	0.641	0.96
69_T	112_T	0.639	0.96
238_M	283_T	0.634	0.96
318_S	324_T	0.633	0.96
163_L	167_F	0.633	0.96
381_E	395_Q	0.630	0.96
373_N	383_E	0.629	0.96
38_I	44_A	0.626	0.96
389_G	422_V	0.625	0.96
152_F	156_L	0.624	0.95
20_V	115_H	0.623	0.95
352_E	367_V	0.620	0.95
67_T	71_I	0.620	0.95
243_Q	271_T	0.618	0.95
71_I	75_V	0.618	0.95
229_L	233_I	0.617	0.95
280_V	283_T	0.617	0.95
303_L	307_M	0.617	0.95
16_T	63_Q	0.616	0.95
133_A	136_M	0.615	0.95
391_W	405_I	0.615	0.95
185_R	206_N	0.613	0.95
72_G	104_F	0.612	0.95
223_R	322_G	0.612	0.95
330_V	338_V	0.610	0.95
280_V	284_I	0.609	0.95
48_V	52_T	0.609	0.95
20_V	120_E	0.609	0.95
251_P	263_V	0.608	0.95
10_A	14_A	0.608	0.95
304_L	333_I	0.606	0.95
98_L	102_I	0.606	0.95
104_F	108_Y	0.606	0.95
214_R	336_E	0.604	0.95
6_L	80_T	0.603	0.95
50_K	147_R	0.602	0.95
74_G	79_S	0.601	0.94
210_E	213_D	0.600	0.94
69_T	73_L	0.599	0.94
170_E	174_E	0.599	0.94
63_Q	115_H	0.598	0.94
46_I	49_K	0.597	0.94
157_N	160_A	0.596	0.94
57_E	146_Y	0.596	0.94
75_V	111_I	0.594	0.94
54_H	146_Y	0.592	0.94
249_R	343_D	0.591	0.94
64_L	112_T	0.589	0.94
251_P	386_D	0.588	0.94
331_E	345_F	0.588	0.94
248_T	343_D	0.586	0.94
294_V	298_A	0.585	0.94
219_I	336_E	0.585	0.94
67_T	108_Y	0.583	0.94
372_V	375_L	0.583	0.94
29_I	58_Y	0.583	0.94
23_E	67_T	0.583	0.94
20_V	66_I	0.581	0.93
286_Q	290_P	0.581	0.93
90_V	99_S	0.578	0.93
293_H	318_S	0.576	0.93
81_I	107_A	0.575	0.93
86_H	100_H	0.574	0.93
265_N	289_N	0.574	0.93
52_T	55_L	0.572	0.93
249_R	263_V	0.571	0.93
417_I	420_H	0.571	0.93
292_I	312_V	0.570	0.93
24_F	63_Q	0.568	0.93
23_E	120_E	0.568	0.93
305_V	309_K	0.568	0.93
236_S	281_D	0.567	0.93
212_D	301_Q	0.567	0.93
129_Q	169_L	0.565	0.92
298_A	317_L	0.564	0.92
148_I	151_P	0.563	0.92
211_F	299_P	0.560	0.92
70_S	120_E	0.558	0.92
191_S	196_E	0.558	0.92
156_L	160_A	0.558	0.92
369_I	372_V	0.557	0.92
31_G	49_K	0.557	0.92
15_L	19_F	0.556	0.92
231_H	234_K	0.556	0.92
260_I	293_H	0.556	0.92
236_S	280_V	0.556	0.92
20_V	70_S	0.555	0.92
313_H	341_I	0.555	0.92
237_E	241_I	0.555	0.92
28_R	58_Y	0.554	0.92
185_R	210_E	0.554	0.92
42_N	46_I	0.554	0.92
367_V	371_Q	0.554	0.92
38_I	41_G	0.552	0.92
131_A	134_V	0.552	0.92
37_L	41_G	0.552	0.92
218_E	386_D	0.551	0.92
281_D	285_S	0.551	0.92
217_K	386_D	0.551	0.92
35_D	38_I	0.550	0.91
71_I	107_A	0.550	0.91
78_E	116_V	0.549	0.91
81_I	109_A	0.547	0.91
43_K	140_K	0.545	0.91
20_V	62_C	0.544	0.91
45_A	135_S	0.544	0.91
12_L	69_T	0.543	0.91
70_S	121_L	0.541	0.91
253_E	257_K	0.541	0.91
151_P	154_W	0.541	0.91
265_N	313_H	0.541	0.91
231_H	283_T	0.540	0.91
396_K	404_S	0.539	0.91
189_S	206_N	0.538	0.91
313_H	330_V	0.538	0.91
112_T	116_V	0.538	0.91
257_K	324_T	0.538	0.91
144_W	148_I	0.535	0.90
180_S	184_L	0.535	0.90
223_R	320_E	0.534	0.90
295_I	318_S	0.533	0.90
12_L	17_A	0.533	0.90
363_L	376_L	0.532	0.90
376_L	427_V	0.532	0.90
331_E	338_V	0.532	0.90
157_N	161_R	0.532	0.90
69_T	108_Y	0.531	0.90
406_I	428_K	0.531	0.90
289_N	312_V	0.530	0.90
67_T	70_S	0.530	0.90
165_K	171_T	0.529	0.90
243_Q	275_S	0.529	0.90
45_A	132_E	0.528	0.90
58_Y	64_L	0.527	0.90
393_L	403_D	0.526	0.90
211_F	337_I	0.526	0.90
50_K	53_T	0.526	0.90
216_A	299_P	0.524	0.89
363_L	375_L	0.524	0.89
72_G	75_V	0.522	0.89
203_K	207_K	0.522	0.89
27_I	60_S	0.522	0.89
351_S	354_R	0.522	0.89
69_T	119_G	0.521	0.89
63_Q	121_L	0.520	0.89
411_E	415_N	0.520	0.89
78_E	108_Y	0.519	0.89
70_S	73_L	0.519	0.89
59_L	63_Q	0.518	0.89
359_G	428_K	0.518	0.89
29_I	136_M	0.517	0.89
296_E	322_G	0.516	0.89
242_I	270_L	0.516	0.89
48_V	136_M	0.515	0.89
59_L	66_I	0.515	0.89
37_L	45_A	0.514	0.89
422_V	425_I	0.514	0.89
222_P	225_E	0.513	0.88
96_G	99_S	0.512	0.88
423_A	426_E	0.512	0.88
218_E	393_L	0.511	0.88
185_R	205_V	0.510	0.88
361_Y	375_L	0.509	0.88
96_G	100_H	0.507	0.88
299_P	302_D	0.506	0.88
417_I	422_V	0.505	0.88
29_I	37_L	0.505	0.88
60_S	67_T	0.504	0.88
26_I	135_S	0.504	0.88
125_T	128_I	0.504	0.88
272_A	276_G	0.503	0.87
74_G	108_Y	0.503	0.87
272_A	282_S	0.502	0.87
252_V	284_I	0.502	0.87
86_H	105_I	0.502	0.87
33_R	45_A	0.501	0.87
56_D	60_S	0.501	0.87
22_S	26_I	0.501	0.87
248_T	313_H	0.500	0.87
391_W	408_E	0.500	0.87
382_N	394_T	0.500	0.87

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4hg0A	2	0.5203	100	0.507	Contact Map
3lhhA	1	0.2815	100	0.767	Contact Map
3ocoA	2	0.3041	99.9	0.782	Contact Map
3oi8A	2	0.3514	99.9	0.783	Contact Map
3ocmA	5	0.3356	99.9	0.789	Contact Map
3kxrA	3	0.3626	99.9	0.793	Contact Map
2v8qE	1	0.5315	99.9	0.794	Contact Map
3lv9A	2	0.2928	99.9	0.798	Contact Map
4iysA	2	0.3198	99.9	0.804	Contact Map
3t4nC	1	0.5338	99.9	0.813	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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