YHDH - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YHDH - Uncharacterized sodium-dependent transporter YhdH

UniProt:	O07577	Sequences: MSEQKPVQWASKIGFVMAAAGSAIGLGAIWKFPYVAGTNGGGAFFLIFVLFTILLGYPLLVGEFIFGRRNQTNAIDAYKKEAPRSAWFLTGWIGVAACFLVLSFYSVIGGWILLYIVKTASGSLSGLSQAQYGALFASIIQNPVQTLAAQLVFMALTVLVVARGVQKGIERVSAVMMPILFLLFILLVLRSLTLNGAMEGVKFLLVPHFGDLTPESILFALGQAFFTLTLGVSVMVTYSSYLPKTQNIPRSAASIVLMNIIVTLLAGLAIFPAVFSFGFQPNEGPTLLFTVLPAVFEQLPFGTLFFIGFLVAFLFAALTSAFSMVEIIVATIGKGDEKKRKKLSWTSGLLIFLVGIPCCLSYGVLSDVHLFGKTFFDIADFTVSNVLMPSGALLISLFIPLKISKSELLAEMRNGSNAGKAFFYTWFYLLRFIVPLAIIIVFLNLIGILSF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	451 (428)
Sequences:	4607 (3089)
Seq/√Len:	149.3

BACSU - YHDH YOCR
HALSA - Q9HPQ2 Q9HPQ1 Q9HHR9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
151_L	352_F	5.314	1.00
202_K	206_V	4.340	1.00
158_V	348_G	4.233	1.00
199_E	202_K	4.110	1.00
208_H	211_D	3.691	1.00
301_F	304_L	3.561	1.00
70_N	77_A	3.143	1.00
116_I	307_I	2.962	1.00
148_A	152_V	2.938	1.00
326_E	340_R	2.921	1.00
72_T	80_K	2.875	1.00
150_Q	355_G	2.874	1.00
66_F	77_A	2.804	1.00
339_K	342_K	2.775	1.00
288_L	313_F	2.763	1.00
244_K	414_N	2.739	1.00
116_I	311_V	2.731	1.00
201_V	268_L	2.695	1.00
147_L	356_I	2.630	1.00
157_T	321_A	2.611	1.00
60_L	235_M	2.610	1.00
205_L	268_L	2.520	1.00
190_R	193_T	2.506	1.00
192_L	201_V	2.413	1.00
71_Q	244_K	2.344	1.00
147_L	359_C	2.201	1.00
31_K	223_Q	2.142	1.00
190_R	305_F	2.115	1.00
185_I	189_L	2.102	1.00
6_P	240_S	2.079	1.00
163_R	171_R	2.037	1.00
181_F	262_V	2.029	1.00
20_A	258_M	2.018	1.00
404_S	407_E	2.014	1.00
429_L	433_I	1.997	1.00
28_A	259_N	1.996	1.00
112_I	314_L	1.994	1.00
185_I	265_L	1.990	1.00
134_A	138_S	1.979	1.00
22_S	229_T	1.973	1.00
198_M	201_V	1.964	1.00
204_L	267_G	1.906	1.00
114_L	118_K	1.890	1.00
188_V	269_A	1.852	1.00
198_M	202_K	1.845	1.00
151_L	155_A	1.815	1.00
56_G	228_L	1.809	1.00
114_L	145_Q	1.804	1.00
57_Y	256_V	1.797	1.00
119_T	306_F	1.794	1.00
205_L	264_L	1.793	1.00
72_T	76_D	1.790	1.00
195_N	279_F	1.753	1.00
13_I	17_M	1.751	1.00
397_L	402_K	1.744	1.00
116_I	314_L	1.729	1.00
259_N	263_T	1.719	1.00
146_T	359_C	1.717	1.00
136_F	140_I	1.707	1.00
51_F	221_L	1.706	1.00
113_L	314_L	1.696	1.00
159_L	163_R	1.692	1.00
427_F	431_R	1.685	1.00
380_D	384_S	1.677	1.00
109_G	317_A	1.676	1.00
8_Q	71_Q	1.664	1.00
117_V	149_A	1.655	1.00
73_N	334_K	1.650	1.00
345_W	349_L	1.643	1.00
354_V	357_P	1.641	1.00
101_V	383_V	1.627	1.00
120_A	307_I	1.618	1.00
109_G	153_F	1.606	1.00
204_L	268_L	1.602	1.00
128_S	131_Q	1.585	1.00
390_S	442_F	1.583	1.00
338_K	346_T	1.576	1.00
147_L	352_F	1.573	1.00
237_T	327_I	1.565	1.00
114_L	149_A	1.563	1.00
149_A	152_V	1.563	1.00
356_I	360_L	1.554	1.00
14_G	170_E	1.551	1.00
76_D	335_G	1.550	1.00
131_Q	134_A	1.544	1.00
158_V	345_W	1.542	1.00
37_G	281_P	1.539	1.00
188_V	265_L	1.534	1.00
195_N	276_S	1.533	1.00
178_P	182_L	1.518	1.00
142_N	147_L	1.516	1.00
190_R	194_L	1.516	1.00
358_C	375_F	1.513	1.00
133_G	138_S	1.501	1.00
135_L	138_S	1.499	1.00
338_K	343_L	1.498	1.00
20_A	24_I	1.495	1.00
106_S	150_Q	1.494	1.00
61_V	252_A	1.489	1.00
160_V	318_L	1.478	1.00
428_Y	432_F	1.475	1.00
184_F	269_A	1.469	1.00
238_Y	323_S	1.449	1.00
411_E	414_N	1.446	1.00
22_S	323_S	1.443	1.00
311_V	315_F	1.424	1.00
64_F	239_S	1.416	1.00
159_L	162_A	1.407	1.00
154_M	351_I	1.405	1.00
182_L	186_L	1.404	1.00
47_I	217_I	1.400	1.00
393_L	439_I	1.399	1.00
133_G	136_F	1.390	1.00
6_P	334_K	1.377	1.00
133_G	137_A	1.370	1.00
39_N	215_E	1.367	1.00
124_L	127_L	1.360	1.00
273_A	295_V	1.359	1.00
204_L	264_L	1.355	1.00
78_Y	236_V	1.353	1.00
104_F	380_D	1.349	1.00
61_V	248_I	1.343	1.00
376_F	380_D	1.331	1.00
229_T	234_V	1.329	1.00
330_A	334_K	1.324	1.00
349_L	353_L	1.322	1.00
231_G	392_A	1.315	1.00
101_V	232_V	1.308	1.00
191_S	273_A	1.296	1.00
45_F	264_L	1.292	1.00
413_R	416_S	1.292	1.00
83_P	86_A	1.287	1.00
38_T	215_E	1.286	1.00
102_L	321_A	1.284	1.00
43_A	209_F	1.277	1.00
189_L	193_T	1.271	1.00
156_L	318_L	1.270	1.00
142_N	145_Q	1.264	1.00
406_S	427_F	1.262	1.00
93_I	391_G	1.260	1.00
150_Q	154_M	1.255	1.00
373_K	377_D	1.247	1.00
409_L	427_F	1.247	1.00
74_A	77_A	1.235	1.00
257_L	261_I	1.229	1.00
333_G	343_L	1.221	1.00
190_R	300_P	1.218	1.00
69_R	411_E	1.217	1.00
212_L	216_S	1.212	1.00
133_G	140_I	1.208	1.00
73_N	76_D	1.203	1.00
400_P	431_R	1.191	1.00
378_I	382_T	1.190	1.00
358_C	379_A	1.189	1.00
275_F	281_P	1.180	1.00
113_L	153_F	1.180	1.00
210_G	213_T	1.177	1.00
64_F	255_I	1.174	1.00
47_I	212_L	1.174	1.00
173_S	319_T	1.172	1.00
234_V	324_M	1.165	1.00
21_G	319_T	1.161	1.00
39_N	216_S	1.159	1.00
406_S	431_R	1.157	1.00
353_L	357_P	1.149	1.00
95_V	331_T	1.148	1.00
161_V	329_V	1.148	1.00
288_L	291_V	1.142	1.00
102_L	351_I	1.140	1.00
9_W	18_A	1.136	1.00
10_A	13_I	1.134	1.00
62_G	426_W	1.124	0.99
103_S	358_C	1.124	0.99
103_S	354_V	1.124	0.99
97_A	387_L	1.112	0.99
35_V	219_F	1.110	0.99
407_E	410_A	1.105	0.99
393_L	442_F	1.102	0.99
224_A	259_N	1.100	0.99
286_T	290_T	1.099	0.99
175_V	179_I	1.096	0.99
74_A	233_S	1.091	0.99
192_L	197_A	1.089	0.99
403_I	407_E	1.088	0.99
64_F	235_M	1.085	0.99
54_L	58_P	1.080	0.99
68_R	411_E	1.072	0.99
187_L	269_A	1.071	0.99
61_V	65_I	1.070	0.99
413_R	421_A	1.070	0.99
31_K	35_V	1.070	0.99
307_I	311_V	1.068	0.99
69_R	410_A	1.063	0.99
319_T	322_F	1.060	0.99
406_S	410_A	1.049	0.99
224_A	260_I	1.047	0.99
176_M	315_F	1.046	0.99
428_Y	433_I	1.043	0.99
424_Y	427_F	1.042	0.99
440_I	444_N	1.040	0.99
246_Q	251_S	1.039	0.99
47_I	216_S	1.037	0.99
425_T	429_L	1.036	0.99
100_L	383_V	1.035	0.99
113_L	152_V	1.035	0.99
172_V	176_M	1.034	0.99
249_P	252_A	1.027	0.99
15_F	19_A	1.025	0.99
186_L	190_R	1.025	0.99
183_L	308_G	1.022	0.99
39_N	219_F	1.021	0.99
403_I	411_E	1.012	0.99
8_Q	243_P	1.012	0.99
342_K	346_T	1.011	0.99
29_I	316_A	1.008	0.99
16_V	20_A	1.003	0.99
64_F	252_A	1.001	0.99
65_I	412_M	0.996	0.99
29_I	313_F	0.996	0.99
373_K	378_I	0.991	0.99
424_Y	428_Y	0.986	0.99
185_I	188_V	0.983	0.99
54_L	221_L	0.983	0.99
127_L	297_E	0.981	0.99
85_S	398_F	0.980	0.99
52_T	224_A	0.979	0.99
199_E	279_F	0.978	0.99
155_A	159_L	0.978	0.99
11_S	14_G	0.977	0.99
126_G	129_Q	0.976	0.99
329_V	344_S	0.974	0.98
141_Q	361_S	0.973	0.98
118_K	135_L	0.967	0.98
102_L	325_V	0.966	0.98
186_L	305_F	0.963	0.98
157_T	318_L	0.963	0.98
282_N	286_T	0.953	0.98
82_A	85_S	0.950	0.98
195_N	200_G	0.949	0.98
109_G	321_A	0.949	0.98
153_F	321_A	0.942	0.98
108_I	111_W	0.938	0.98
160_V	172_V	0.938	0.98
117_V	120_A	0.938	0.98
134_A	137_A	0.938	0.98
188_V	192_L	0.935	0.98
81_E	399_I	0.934	0.98
374_T	377_D	0.931	0.98
31_K	380_D	0.926	0.98
425_T	428_Y	0.924	0.98
35_V	223_Q	0.924	0.98
101_V	324_M	0.923	0.98
114_L	139_I	0.919	0.98
162_A	341_K	0.918	0.98
79_K	86_A	0.917	0.98
197_A	200_G	0.915	0.98
158_V	344_S	0.912	0.98
260_I	263_T	0.912	0.98
122_G	125_S	0.909	0.98
10_A	14_G	0.907	0.98
107_V	359_C	0.906	0.98
371_F	378_I	0.905	0.98
7_V	166_Q	0.905	0.98
43_A	212_L	0.903	0.98
411_E	415_G	0.902	0.98
436_L	440_I	0.901	0.97
137_A	140_I	0.898	0.97
52_T	260_I	0.894	0.97
339_K	343_L	0.893	0.97
285_P	288_L	0.892	0.97
130_A	134_A	0.892	0.97
144_V	148_A	0.891	0.97
50_L	53_I	0.890	0.97
260_I	264_L	0.888	0.97
233_S	327_I	0.885	0.97
121_S	124_L	0.881	0.97
332_I	338_K	0.880	0.97
436_L	439_I	0.879	0.97
253_A	257_L	0.879	0.97
59_L	438_I	0.876	0.97
422_F	425_T	0.876	0.97
190_R	299_L	0.875	0.97
132_Y	136_F	0.868	0.97
194_L	197_A	0.867	0.97
386_V	446_I	0.866	0.97
215_E	219_F	0.865	0.97
406_S	409_L	0.863	0.97
113_L	156_L	0.856	0.97
102_L	324_M	0.854	0.97
135_L	139_I	0.851	0.96
201_V	205_L	0.851	0.96
299_L	305_F	0.849	0.96
65_I	408_L	0.849	0.96
282_N	291_V	0.846	0.96
37_G	275_F	0.845	0.96
20_A	319_T	0.844	0.96
161_V	344_S	0.842	0.96
68_R	415_G	0.842	0.96
296_F	306_F	0.838	0.96
343_L	346_T	0.836	0.96
106_S	153_F	0.835	0.96
14_G	173_S	0.834	0.96
147_L	151_L	0.833	0.96
160_V	322_F	0.832	0.96
86_A	335_G	0.829	0.96
145_Q	149_A	0.829	0.96
232_V	324_M	0.829	0.96
186_L	189_L	0.827	0.96
400_P	430_L	0.825	0.96
332_I	343_L	0.825	0.96
99_F	350_L	0.823	0.96
322_F	326_E	0.823	0.96
98_C	328_I	0.822	0.96
393_L	397_L	0.820	0.96
36_A	204_L	0.820	0.96
74_A	94_G	0.820	0.96
412_M	416_S	0.818	0.96
30_W	34_Y	0.816	0.96
234_V	323_S	0.816	0.96
35_V	39_N	0.815	0.95
18_A	238_Y	0.815	0.95
130_A	133_G	0.809	0.95
76_D	79_K	0.806	0.95
37_G	274_V	0.802	0.95
19_A	22_S	0.801	0.95
361_S	376_F	0.800	0.95
127_L	130_A	0.800	0.95
299_L	302_G	0.799	0.95
410_A	421_A	0.798	0.95
381_F	386_V	0.798	0.95
112_I	313_F	0.795	0.95
169_I	322_F	0.795	0.95
186_L	308_G	0.794	0.95
232_V	388_M	0.793	0.95
390_S	394_L	0.793	0.95
55_L	437_A	0.793	0.95
62_G	399_I	0.792	0.95
126_G	130_A	0.792	0.95
18_A	22_S	0.792	0.95
116_I	120_A	0.789	0.95
90_T	394_L	0.787	0.95
36_A	267_G	0.787	0.95
79_K	91_G	0.787	0.95
294_A	298_Q	0.786	0.95
212_L	217_I	0.783	0.94
152_V	156_L	0.780	0.94
50_L	54_L	0.780	0.94
376_F	379_A	0.779	0.94
27_G	31_K	0.779	0.94
241_Y	326_E	0.777	0.94
89_L	92_W	0.774	0.94
74_A	236_V	0.774	0.94
278_G	281_P	0.773	0.94
191_S	272_P	0.772	0.94
434_V	437_A	0.771	0.94
432_F	436_L	0.770	0.94
137_A	141_Q	0.768	0.94
37_G	203_F	0.767	0.94
332_I	336_D	0.764	0.94
49_V	260_I	0.764	0.94
284_G	287_L	0.760	0.93
82_A	398_F	0.759	0.93
231_G	388_M	0.759	0.93
176_M	319_T	0.757	0.93
9_W	15_F	0.757	0.93
60_L	64_F	0.755	0.93
270_I	293_P	0.752	0.93
102_L	161_V	0.749	0.93
28_A	48_F	0.749	0.93
201_V	207_P	0.746	0.93
230_L	234_V	0.746	0.93
93_I	394_L	0.746	0.93
127_L	131_Q	0.742	0.93
22_S	234_V	0.742	0.93
243_P	246_Q	0.738	0.92
117_V	152_V	0.733	0.92
374_T	378_I	0.733	0.92
75_I	331_T	0.733	0.92
409_L	413_R	0.732	0.92
98_C	233_S	0.731	0.92
177_M	319_T	0.730	0.92
152_V	155_A	0.726	0.92
405_K	427_F	0.723	0.92
357_P	375_F	0.722	0.92
181_F	185_I	0.721	0.92
396_S	400_P	0.719	0.91
254_S	258_M	0.719	0.91
104_F	384_S	0.718	0.91
73_N	330_A	0.716	0.91
16_V	255_I	0.715	0.91
76_D	80_K	0.714	0.91
30_W	285_P	0.714	0.91
162_A	344_S	0.713	0.91
435_P	438_I	0.712	0.91
38_T	219_F	0.708	0.91
36_A	42_G	0.708	0.91
344_S	348_G	0.703	0.91
15_F	64_F	0.700	0.90
394_L	397_L	0.699	0.90
223_Q	227_T	0.699	0.90
239_S	259_N	0.698	0.90
348_G	352_F	0.697	0.90
160_V	168_G	0.696	0.90
57_Y	235_M	0.694	0.90
179_I	183_L	0.693	0.90
33_P	40_G	0.693	0.90
125_S	128_S	0.693	0.90
225_F	392_A	0.691	0.90
180_L	316_A	0.690	0.90
277_F	298_Q	0.689	0.90
423_F	426_W	0.685	0.89
158_V	162_A	0.682	0.89
36_A	45_F	0.682	0.89
24_I	28_A	0.679	0.89
12_K	250_R	0.676	0.89
393_L	396_S	0.676	0.89
371_F	375_F	0.676	0.89
34_Y	281_P	0.673	0.89
373_K	381_F	0.672	0.88
74_A	95_V	0.672	0.88
19_A	255_I	0.671	0.88
171_R	175_V	0.669	0.88
22_S	101_V	0.668	0.88
324_M	328_I	0.667	0.88
61_V	412_M	0.666	0.88
131_Q	135_L	0.666	0.88
35_V	38_T	0.664	0.88
193_T	196_G	0.663	0.88
276_S	280_Q	0.662	0.88
133_G	290_T	0.661	0.88
118_K	145_Q	0.660	0.88
303_T	307_I	0.657	0.87
325_V	344_S	0.656	0.87
440_I	443_L	0.655	0.87
114_L	117_V	0.655	0.87
99_F	351_I	0.655	0.87
95_V	327_I	0.654	0.87
421_A	424_Y	0.652	0.87
426_W	430_L	0.652	0.87
328_I	347_S	0.652	0.87
276_S	298_Q	0.651	0.87
409_L	412_M	0.651	0.87
125_S	129_Q	0.650	0.87
60_L	256_V	0.650	0.87
285_P	290_T	0.648	0.87
81_E	403_I	0.647	0.87
105_Y	108_I	0.647	0.87
79_K	335_G	0.647	0.87
123_S	128_S	0.647	0.87
190_R	195_N	0.647	0.87
25_G	32_F	0.646	0.86
75_I	91_G	0.645	0.86
24_I	181_F	0.645	0.86
275_F	278_G	0.645	0.86
113_L	149_A	0.644	0.86
78_Y	395_I	0.644	0.86
332_I	350_L	0.642	0.86
106_S	321_A	0.641	0.86
413_R	423_F	0.640	0.86
163_R	341_K	0.638	0.86
154_M	348_G	0.638	0.86
222_G	385_N	0.637	0.86
101_V	384_S	0.637	0.86
51_F	54_L	0.635	0.86
300_P	372_G	0.635	0.86
13_I	20_A	0.634	0.85
333_G	340_R	0.634	0.85
103_S	321_A	0.633	0.85
36_A	212_L	0.632	0.85
60_L	230_L	0.632	0.85
325_V	347_S	0.630	0.85
98_C	327_I	0.630	0.85
66_F	81_E	0.629	0.85
336_D	343_L	0.629	0.85
162_A	345_W	0.628	0.85
401_L	405_K	0.628	0.85
145_Q	148_A	0.624	0.85
48_F	227_T	0.624	0.85
439_I	443_L	0.621	0.84
429_L	434_V	0.620	0.84
77_A	236_V	0.619	0.84
155_A	345_W	0.618	0.84
229_T	323_S	0.618	0.84
196_G	200_G	0.617	0.84
154_M	352_F	0.616	0.84
196_G	199_E	0.616	0.84
247_N	416_S	0.616	0.84
97_A	391_G	0.616	0.84
49_V	53_I	0.615	0.84
274_V	279_F	0.611	0.83
109_G	314_L	0.610	0.83
180_L	312_A	0.610	0.83
43_A	47_I	0.610	0.83
306_F	310_L	0.610	0.83
401_L	431_R	0.609	0.83
191_S	271_F	0.609	0.83
252_A	256_V	0.608	0.83
289_F	309_F	0.608	0.83
165_V	169_I	0.608	0.83
349_L	399_I	0.607	0.83
411_E	416_S	0.607	0.83
442_F	446_I	0.607	0.83
99_F	347_S	0.606	0.83
271_F	276_S	0.604	0.83
377_D	380_D	0.601	0.82
202_K	205_L	0.601	0.82
61_V	249_P	0.600	0.82
40_G	44_F	0.597	0.82
179_I	315_F	0.596	0.82
154_M	157_T	0.595	0.82
191_S	269_A	0.593	0.81
59_L	396_S	0.593	0.81
274_V	281_P	0.592	0.81
238_Y	320_S	0.592	0.81
96_A	100_L	0.592	0.81
17_M	21_G	0.591	0.81
343_L	347_S	0.591	0.81
175_V	311_V	0.590	0.81
82_A	86_A	0.590	0.81
384_S	388_M	0.590	0.81
164_G	293_P	0.587	0.81
63_E	67_G	0.585	0.81
294_A	297_E	0.583	0.80
250_R	254_S	0.583	0.80
244_K	411_E	0.582	0.80
85_S	402_K	0.582	0.80
200_G	305_F	0.580	0.80
89_L	93_I	0.578	0.80
91_G	104_F	0.578	0.80
61_V	318_L	0.578	0.80
12_K	251_S	0.578	0.80
34_Y	285_P	0.577	0.80
379_A	383_V	0.577	0.80
35_V	216_S	0.576	0.80
326_E	333_G	0.576	0.80
333_G	338_K	0.576	0.80
111_W	115_Y	0.574	0.79
231_G	327_I	0.574	0.79
161_V	322_F	0.574	0.79
216_S	223_Q	0.574	0.79
59_L	434_V	0.572	0.79
346_T	350_L	0.572	0.79
229_T	324_M	0.571	0.79
309_F	326_E	0.570	0.79
398_F	402_K	0.569	0.79
69_R	407_E	0.569	0.79
72_T	79_K	0.569	0.79
57_Y	252_A	0.568	0.79
214_P	217_I	0.567	0.78
13_I	16_V	0.567	0.78
409_L	423_F	0.565	0.78
241_Y	330_A	0.563	0.78
423_F	427_F	0.563	0.78
51_F	224_A	0.563	0.78
373_K	376_F	0.562	0.78
74_A	331_T	0.562	0.78
270_I	292_L	0.561	0.78
195_N	198_M	0.561	0.78
161_V	325_V	0.559	0.78
106_S	154_M	0.559	0.78
320_S	323_S	0.557	0.77
427_F	432_F	0.557	0.77
118_K	123_S	0.557	0.77
142_N	356_I	0.556	0.77
27_G	30_W	0.555	0.77
150_Q	359_C	0.555	0.77
98_C	234_V	0.553	0.77
31_K	384_S	0.552	0.77
211_D	216_S	0.552	0.77
332_I	347_S	0.551	0.76
103_S	379_A	0.551	0.76
28_A	52_T	0.551	0.76
296_F	299_L	0.549	0.76
316_A	319_T	0.548	0.76
64_F	248_I	0.547	0.76
45_F	204_L	0.544	0.76
31_K	108_I	0.544	0.76
30_W	284_G	0.541	0.75
9_W	426_W	0.541	0.75
420_K	423_F	0.539	0.75
59_L	224_A	0.538	0.75
240_S	334_K	0.536	0.75
19_A	60_L	0.536	0.75
300_P	303_T	0.536	0.75
196_G	276_S	0.536	0.75
94_G	391_G	0.536	0.75
270_I	287_L	0.535	0.74
19_A	235_M	0.535	0.74
176_M	322_F	0.534	0.74
62_G	65_I	0.534	0.74
107_V	150_Q	0.534	0.74
177_M	180_L	0.533	0.74
377_D	381_F	0.533	0.74
90_T	398_F	0.532	0.74
397_L	401_L	0.532	0.74
150_Q	157_T	0.531	0.74
9_W	56_G	0.530	0.74
62_G	430_L	0.529	0.74
237_T	323_S	0.529	0.74
350_L	354_V	0.528	0.73
15_F	242_L	0.528	0.73
28_A	263_T	0.528	0.73
46_L	212_L	0.527	0.73
242_L	246_Q	0.526	0.73
205_L	209_F	0.525	0.73
345_W	348_G	0.525	0.73
28_A	260_I	0.524	0.73
69_R	414_N	0.524	0.73
95_V	328_I	0.522	0.73
328_I	349_L	0.522	0.73
227_T	259_N	0.522	0.73
405_K	409_L	0.522	0.73
236_V	395_I	0.520	0.72
179_I	182_L	0.520	0.72
276_S	279_F	0.520	0.72
117_V	121_S	0.520	0.72
305_F	308_G	0.519	0.72
272_P	276_S	0.518	0.72
194_L	200_G	0.518	0.72
408_L	411_E	0.518	0.72
30_W	33_P	0.517	0.72
122_G	303_T	0.517	0.72
74_A	234_V	0.517	0.72
15_F	426_W	0.516	0.72
197_A	201_V	0.516	0.72
16_V	254_S	0.516	0.72
216_S	219_F	0.516	0.72
28_A	227_T	0.515	0.72
66_F	395_I	0.514	0.71
120_A	123_S	0.512	0.71
189_L	192_L	0.511	0.71
104_F	232_V	0.510	0.71
271_F	275_F	0.509	0.71
186_L	192_L	0.509	0.71
228_L	260_I	0.509	0.71
110_G	150_Q	0.508	0.71
262_V	271_F	0.508	0.71
428_Y	436_L	0.507	0.70
80_K	436_L	0.506	0.70
30_W	40_G	0.503	0.70
42_G	59_L	0.501	0.70
89_L	173_S	0.500	0.69

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4xp4A	1	0.9623	100	0.031	Contact Map
4us3A	1	0.9734	100	0.037	Contact Map
2a65A	2	0.9468	100	0.089	Contact Map
3giaA	1	0.8492	98.7	0.901	Contact Map
3l1lA	2	0.8248	98.2	0.916	Contact Map
4djkA	2	0.8603	98.1	0.918	Contact Map
2jlnA	1	0.8492	97.6	0.926	Contact Map
4wgvA	2	0.8004	93.3	0.949	Contact Map
3dh4A	3	0.8337	86.7	0.956	Contact Map
2xq2A	2	0.8514	85.6	0.956	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0123 seconds.