GREMLIN Database
YHJQ - Uncharacterized cysteine-rich protein YhjQ
UniProt: O07571 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 108 (104)
Sequences: 750 (557)
Seq/√Len: 54.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
8_C12_C4.0191.00
13_I53_V3.3271.00
75_E104_R3.1871.00
44_E58_T2.3541.00
47_D54_K2.2911.00
65_E72_D2.2561.00
101_E105_S2.1471.00
82_G97_F2.1381.00
75_E100_A2.0761.00
56_M106_M1.9271.00
67_C106_M1.9071.00
6_E10_E1.8951.00
71_A104_R1.8560.99
78_G97_F1.8510.99
37_G40_R1.8130.99
52_A56_M1.8110.99
94_K98_T1.7870.99
48_I73_I1.7490.99
75_E78_G1.6120.98
31_V34_H1.6070.98
20_N43_R1.5870.98
75_E79_T1.5640.98
7_A102_Q1.4180.96
87_D91_A1.4130.96
79_T82_G1.3800.96
52_A67_C1.3650.95
8_C106_M1.3460.95
15_C45_C1.3190.94
8_C67_C1.2860.94
68_A72_D1.2840.94
22_C88_H1.2440.93
50_A54_K1.2300.92
102_Q105_S1.2280.92
79_T97_F1.2230.92
12_C67_C1.2090.91
24_T40_R1.1890.91
42_D95_A1.1630.90
52_A66_I1.1560.90
43_R47_D1.1490.89
48_I66_I1.1480.89
55_A66_I1.1480.89
65_E69_L1.1460.89
22_C38_C1.1440.89
16_M23_F1.1350.89
45_C49_C1.1130.88
68_A104_R1.0980.87
20_N44_E1.0900.87
29_E88_H1.0860.86
10_E14_D1.0830.86
99_C103_C1.0770.86
15_C49_C1.0760.86
17_K57_Q1.0760.86
11_A14_D1.0510.84
47_D58_T1.0340.83
33_H36_S1.0310.83
62_F76_A1.0080.82
9_I56_M1.0080.82
20_N50_A1.0000.81
78_G82_G0.9900.81
44_E60_S0.9760.80
30_S33_H0.9430.77
38_C80_E0.9290.76
52_A106_M0.9230.76
5_S63_M0.8830.73
28_E59_D0.8770.72
80_E83_K0.8630.71
48_I51_L0.8590.71
8_C56_M0.8530.70
16_M50_A0.8500.70
12_C71_A0.8490.70
32_Q36_S0.8450.69
49_C96_C0.8360.68
27_L39_I0.8350.68
35_L86_H0.8300.68
55_A60_S0.8250.67
16_M20_N0.8150.66
82_G90_Q0.8010.65
22_C89_C0.7950.65
62_F73_I0.7900.64
87_D90_Q0.7840.63
84_H88_H0.7840.63
13_I16_M0.7780.63
20_N55_A0.7780.63
91_A94_K0.7660.62
22_C93_A0.7630.61
11_A98_T0.7580.61
44_E55_A0.7580.61
35_L85_D0.7580.61
7_A11_A0.7540.60
18_A91_A0.7530.60
15_C19_C0.7520.60
23_F84_H0.7490.60
66_I69_L0.7480.60
64_K78_G0.7440.59
79_T83_K0.7420.59
37_G41_L0.7420.59
22_C80_E0.7420.59
12_C56_M0.7390.59
26_C93_A0.7340.58
8_C11_A0.7330.58
23_F44_E0.7320.58
12_C106_M0.7180.57
75_E97_F0.7150.56
72_D76_A0.7140.56
47_D51_L0.7070.55
22_C84_H0.7020.55
38_C89_C0.7020.55
47_D50_A0.6880.53
29_E42_D0.6780.52
35_L42_D0.6700.52
82_G94_K0.6640.51
45_C96_C0.6560.50
25_K89_C0.6450.49
51_L55_A0.6410.48
76_A83_K0.6390.48
67_C71_A0.6390.48
11_A95_A0.6350.48
100_A104_R0.6310.47
68_A107_A0.6300.47
42_D52_A0.6210.46
35_L38_C0.6200.46
69_L72_D0.6190.46
23_F55_A0.6170.46
38_C88_H0.6150.46
11_A102_Q0.6090.45
85_D90_Q0.6070.45
56_M67_C0.5930.43
37_G59_D0.5830.42
30_S36_S0.5720.41
54_K58_T0.5680.41
16_M53_V0.5540.39
9_I101_E0.5530.39
20_N47_D0.5520.39
24_T28_E0.5480.39
35_L84_H0.5430.38
98_T101_E0.5390.38
63_M66_I0.5360.37
25_K29_E0.5310.37
12_C53_V0.5280.37
77_C81_C0.5270.37
15_C96_C0.5250.36
71_A100_A0.5240.36
9_I57_Q0.5240.36
22_C26_C0.5230.36
5_S56_M0.5230.36
23_F43_R0.5200.36
42_D84_H0.5190.36
19_C49_C0.5180.36
23_F42_D0.5110.35
41_L76_A0.5100.35
71_A82_G0.5090.35
5_S8_C0.5060.35
18_A95_A0.5030.34
13_I57_Q0.5030.34
19_C45_C0.5000.34
18_A29_E0.5000.34
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3lmfA 4 0.9815 100 0.157 Contact Map
3kawA 2 0.8796 100 0.248 Contact Map
5c4iB 1 0.5648 17.7 0.921 Contact Map
1ti6B 2 0.8796 17.4 0.922 Contact Map
1h0hB 1 0.9167 8.2 0.933 Contact Map
2ivfB 1 0.9074 7.7 0.933 Contact Map
4r0vA 1 0 7.2 0.934 Contact Map
1q16B 2 0.7963 7.2 0.934 Contact Map
4z3xE 2 0.6667 6.3 0.936 Contact Map
1kqfB 3 0.9444 5.1 0.939 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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