YHJB - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YHJB - Uncharacterized symporter YhjB

UniProt:	O07556	Sequences: MNAALIIIFGVLLLSIFLGIRAQKGKDMNLEQWTVGGRGFGTVFVFLLMAGEIYTTFTFLGGSGWAYGKGGPAFYIIAYGCLAYILSYWLLPAVWTYAKQHKLMSQSDFFTKKYNSPLLGILVSLVGIAALIPYLVLQLKGLGLIVSETSYGKITPTAAIWIGAVSITVYVMVSGIHGSAWISVVKDIMILVVVLFLGVYLPIHYYGGFQDMFQQIETAKPGFLTLPESGQSVAWFSSTVLLTALGFYMWPHTFSASYSAENPKVFRKNAIIMPLYQLVLLFVLFVGFAAILQVPDLNGADGDLSLLRLSLQAFDPWFVGIIGAAGLLTALVPGSMILMSASTLFAKNVYKVIAPRTTEQQVSALAKFLVPVIALISVYFTFKGGNTIVTLLLMGYSLVTQLFPALLFSLLKHNMVTKQGAFAGIIAGVGAVTYITMTETTIGTLFPALPQAAKDLNVGIVALLLNITVMMAVSLMTRKAKSAAADQAA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	489 (454)
Sequences:	11670 (7434)
Seq/√Len:	348.9

ECOLI - PANF ACTP PUTP YIDK
BACSU - YHJB YODF YWCA OPUE YCGO
HALSA - Q9HP63 Q9HR16
SULSO - Q97VX6 Q7LX83

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
427_A	469_V	5.753	1.00
358_T	361_Q	4.165	1.00
416_V	470_M	3.952	1.00
262_N	265_V	3.911	1.00
17_F	21_R	3.631	1.00
354_A	361_Q	3.566	1.00
427_A	465_L	3.290	1.00
168_T	374_A	3.269	1.00
199_V	203_I	3.224	1.00
424_G	470_M	3.124	1.00
471_M	475_L	3.105	1.00
350_Y	357_T	3.031	1.00
423_A	473_V	3.000	1.00
431_A	465_L	2.984	1.00
469_V	473_V	2.911	1.00
417_T	477_T	2.882	1.00
211_D	214_Q	2.875	1.00
473_V	477_T	2.845	1.00
360_Q	364_A	2.806	1.00
201_L	289_A	2.782	1.00
419_Q	477_T	2.775	1.00
155_T	158_A	2.729	1.00
364_A	368_F	2.685	1.00
111_T	120_G	2.678	1.00
408_F	470_M	2.573	1.00
420_G	474_S	2.533	1.00
164_A	378_V	2.518	1.00
368_F	372_V	2.357	1.00
176_I	259_S	2.325	1.00
40_F	180_A	2.297	1.00
290_A	305_S	2.281	1.00
10_G	14_L	2.258	1.00
31_E	38_R	2.227	1.00
261_E	265_V	2.199	1.00
111_T	117_P	2.150	1.00
211_D	215_Q	2.117	1.00
118_L	422_F	2.071	1.00
357_T	361_Q	2.041	1.00
354_A	357_T	2.039	1.00
417_T	420_G	2.019	1.00
412_K	416_V	2.015	1.00
423_A	469_V	2.009	1.00
109_F	409_S	1.993	1.00
161_W	165_V	1.990	1.00
64_G	303_D	1.967	1.00
405_A	421_A	1.958	1.00
419_Q	423_A	1.951	1.00
412_K	415_M	1.942	1.00
32_Q	37_G	1.942	1.00
265_V	268_K	1.923	1.00
115_N	118_L	1.923	1.00
375_L	379_Y	1.919	1.00
114_Y	416_V	1.917	1.00
214_Q	218_T	1.891	1.00
350_Y	354_A	1.882	1.00
347_K	351_K	1.876	1.00
264_K	268_K	1.871	1.00
13_L	17_F	1.862	1.00
308_R	312_Q	1.822	1.00
408_F	467_I	1.822	1.00
195_L	199_V	1.818	1.00
468_T	472_A	1.814	1.00
193_V	325_A	1.786	1.00
430_G	434_Y	1.785	1.00
56_T	141_G	1.777	1.00
35_V	38_R	1.773	1.00
351_K	362_V	1.772	1.00
264_K	267_R	1.767	1.00
417_T	474_S	1.759	1.00
415_M	475_L	1.754	1.00
350_Y	365_L	1.747	1.00
167_I	334_G	1.741	1.00
420_G	473_V	1.729	1.00
103_L	112_K	1.720	1.00
11_V	15_S	1.711	1.00
364_A	367_K	1.709	1.00
220_K	223_F	1.682	1.00
210_Q	214_Q	1.672	1.00
42_T	265_V	1.670	1.00
214_Q	217_E	1.666	1.00
44_F	184_V	1.653	1.00
174_S	178_G	1.652	1.00
420_G	424_G	1.650	1.00
412_K	475_L	1.646	1.00
320_G	324_A	1.643	1.00
225_T	228_E	1.601	1.00
345_F	349_V	1.587	1.00
361_Q	364_A	1.575	1.00
294_V	312_Q	1.558	1.00
345_F	369_L	1.531	1.00
464_L	468_T	1.520	1.00
412_K	471_M	1.515	1.00
427_A	431_A	1.510	1.00
18_L	185_V	1.508	1.00
5_L	9_F	1.505	1.00
206_Y	212_M	1.478	1.00
423_A	427_A	1.469	1.00
415_M	478_R	1.453	1.00
143_G	160_I	1.453	1.00
108_D	348_N	1.451	1.00
165_V	169_V	1.432	1.00
338_L	374_A	1.423	1.00
222_G	225_T	1.420	1.00
117_P	121_I	1.419	1.00
47_L	184_V	1.417	1.00
357_T	362_V	1.410	1.00
144_L	301_D	1.391	1.00
115_N	418_K	1.390	1.00
350_Y	361_Q	1.389	1.00
42_T	46_F	1.387	1.00
90_L	407_L	1.381	1.00
125_L	349_V	1.377	1.00
217_E	221_P	1.374	1.00
45_V	48_L	1.371	1.00
280_L	283_V	1.371	1.00
126_V	429_V	1.368	1.00
223_F	227_P	1.361	1.00
9_F	13_L	1.329	1.00
45_V	260_A	1.329	1.00
208_G	211_D	1.328	1.00
122_L	422_F	1.328	1.00
117_P	352_V	1.322	1.00
108_D	347_K	1.321	1.00
73_A	77_I	1.317	1.00
158_A	162_I	1.313	1.00
341_A	373_I	1.302	1.00
158_A	161_W	1.293	1.00
183_S	256_A	1.289	1.00
209_F	213_F	1.273	1.00
215_Q	218_T	1.271	1.00
297_L	300_A	1.266	1.00
417_T	478_R	1.264	1.00
29_N	32_Q	1.256	1.00
164_A	374_A	1.253	1.00
287_G	291_I	1.248	1.00
451_Q	454_K	1.248	1.00
167_I	331_L	1.247	1.00
363_S	367_K	1.243	1.00
361_Q	365_L	1.238	1.00
160_I	378_V	1.230	1.00
14_L	18_L	1.223	1.00
6_I	10_G	1.222	1.00
223_F	226_L	1.221	1.00
119_L	422_F	1.220	1.00
34_T	366_A	1.210	1.00
91_L	95_W	1.208	1.00
105_S	343_T	1.208	1.00
243_T	246_G	1.202	1.00
119_L	421_A	1.196	1.00
415_M	479_K	1.191	1.00
111_T	352_V	1.190	1.00
113_K	409_S	1.189	1.00
207_G	211_D	1.186	1.00
16_I	19_G	1.183	1.00
345_F	350_Y	1.179	1.00
142_L	163_G	1.171	1.00
465_L	469_V	1.167	1.00
109_F	113_K	1.164	1.00
434_Y	438_T	1.162	1.00
419_Q	473_V	1.153	1.00
244_A	250_W	1.152	1.00
246_G	249_M	1.140	1.00
467_I	471_M	1.139	1.00
14_L	17_F	1.139	1.00
36_G	40_F	1.138	1.00
182_I	335_S	1.137	1.00
215_Q	292_L	1.135	1.00
122_L	425_I	1.134	1.00
183_S	335_S	1.131	1.00
161_W	378_V	1.128	1.00
424_G	466_N	1.126	1.00
346_A	366_A	1.119	1.00
286_V	290_A	1.114	1.00
419_Q	476_M	1.107	1.00
192_V	196_F	1.106	1.00
84_Y	88_Y	1.106	1.00
154_I	159_A	1.105	1.00
188_I	192_V	1.101	1.00
200_Y	204_H	1.094	1.00
139_L	164_A	1.090	1.00
15_S	185_V	1.084	1.00
157_T	382_F	1.083	1.00
135_L	377_S	1.077	1.00
48_L	336_M	1.076	1.00
120_G	348_N	1.076	1.00
123_V	425_I	1.075	1.00
405_A	425_I	1.073	1.00
52_E	336_M	1.070	1.00
246_G	250_W	1.070	1.00
464_L	467_I	1.068	1.00
147_S	156_P	1.066	1.00
204_H	293_Q	1.061	1.00
125_L	129_A	1.057	1.00
418_K	422_F	1.056	1.00
118_L	122_L	1.051	1.00
459_G	463_L	1.051	1.00
36_G	176_I	1.049	1.00
301_D	304_L	1.046	1.00
100_Q	263_P	1.045	1.00
213_F	217_E	1.042	1.00
27_D	32_Q	1.041	1.00
226_L	229_S	1.041	1.00
212_M	216_I	1.035	1.00
452_A	455_D	1.033	1.00
157_T	161_W	1.028	1.00
365_L	369_L	1.028	1.00
16_I	20_I	1.027	1.00
50_A	276_Y	1.027	1.00
46_F	272_I	1.018	1.00
291_I	295_P	1.016	1.00
469_V	472_A	1.014	1.00
251_P	340_S	1.012	1.00
431_A	469_V	1.011	1.00
453_A	456_L	1.010	1.00
239_T	242_L	1.006	1.00
170_Y	335_S	1.006	1.00
310_S	322_I	1.004	1.00
92_P	267_R	1.001	1.00
118_L	418_K	0.997	1.00
128_I	345_F	0.997	1.00
346_A	365_L	0.996	1.00
14_L	185_V	0.994	1.00
130_A	398_L	0.993	1.00
235_W	239_T	0.993	1.00
210_Q	213_F	0.992	1.00
416_V	474_S	0.992	1.00
139_L	160_I	0.990	1.00
11_V	331_L	0.989	1.00
461_V	464_L	0.989	1.00
401_Q	466_N	0.988	1.00
369_L	372_V	0.988	1.00
114_Y	409_S	0.988	1.00
186_K	335_S	0.986	1.00
172_M	371_P	0.984	1.00
417_T	473_V	0.981	1.00
251_P	255_S	0.976	1.00
43_V	47_L	0.976	1.00
31_E	102_K	0.975	1.00
289_A	293_Q	0.974	1.00
196_F	200_Y	0.973	1.00
243_T	247_F	0.966	1.00
150_S	154_I	0.964	1.00
17_F	20_I	0.963	1.00
68_G	302_G	0.963	1.00
167_I	335_S	0.961	1.00
359_E	362_V	0.959	1.00
287_G	290_A	0.953	1.00
101_H	112_K	0.953	1.00
85_I	89_W	0.952	1.00
345_F	373_I	0.947	1.00
391_L	399_V	0.946	1.00
357_T	365_L	0.942	1.00
12_L	15_S	0.941	1.00
196_F	318_F	0.940	1.00
82_L	86_L	0.937	1.00
34_T	343_T	0.935	1.00
409_S	421_A	0.932	1.00
110_F	123_V	0.930	1.00
379_Y	383_K	0.929	1.00
308_R	311_L	0.929	1.00
221_P	224_L	0.926	1.00
416_V	420_G	0.926	1.00
388_I	392_L	0.919	1.00
339_M	342_S	0.919	1.00
408_F	416_V	0.916	1.00
235_W	238_S	0.915	1.00
78_A	82_L	0.915	1.00
89_W	92_P	0.914	1.00
25_G	177_H	0.912	1.00
161_W	382_F	0.910	1.00
8_I	12_L	0.909	1.00
170_Y	331_L	0.909	1.00
136_V	380_F	0.902	1.00
206_Y	211_D	0.897	1.00
200_Y	203_I	0.897	1.00
342_S	346_A	0.896	1.00
350_Y	353_I	0.895	1.00
296_D	300_A	0.894	1.00
126_V	425_I	0.889	1.00
284_L	288_F	0.887	1.00
426_I	430_G	0.886	1.00
65_W	69_K	0.885	1.00
220_K	227_P	0.885	1.00
424_G	428_G	0.883	1.00
44_F	180_A	0.883	1.00
408_F	471_M	0.881	1.00
415_M	480_A	0.880	1.00
392_L	396_Y	0.879	1.00
285_F	288_F	0.879	1.00
366_A	370_V	0.874	1.00
353_I	357_T	0.870	1.00
43_V	46_F	0.867	1.00
110_F	119_L	0.866	1.00
92_P	263_P	0.865	1.00
465_L	468_T	0.865	1.00
56_T	330_A	0.865	1.00
203_I	209_F	0.859	1.00
434_Y	437_M	0.858	1.00
466_N	470_M	0.858	1.00
221_P	226_L	0.854	1.00
314_F	318_F	0.852	1.00
183_S	336_M	0.851	1.00
182_I	186_K	0.851	1.00
351_K	355_P	0.850	1.00
304_L	308_R	0.847	1.00
286_V	309_L	0.842	1.00
122_L	426_I	0.842	1.00
11_V	328_L	0.839	1.00
332_V	335_S	0.830	1.00
232_S	236_F	0.828	1.00
151_Y	155_T	0.826	1.00
213_F	216_I	0.825	1.00
128_I	341_A	0.825	1.00
420_G	423_A	0.825	1.00
52_E	183_S	0.824	1.00
219_A	222_G	0.820	1.00
147_S	151_Y	0.815	1.00
27_D	363_S	0.814	1.00
23_Q	173_V	0.814	1.00
47_L	187_D	0.814	1.00
42_T	268_K	0.813	1.00
285_F	289_A	0.812	1.00
48_L	256_A	0.810	1.00
21_R	25_G	0.808	1.00
181_W	184_V	0.807	1.00
286_V	289_A	0.803	1.00
6_I	9_F	0.802	1.00
88_Y	271_I	0.801	1.00
286_V	291_I	0.800	1.00
368_F	371_P	0.800	1.00
48_L	52_E	0.798	1.00
260_A	266_F	0.796	1.00
204_H	313_A	0.793	1.00
224_L	228_E	0.792	1.00
310_S	319_V	0.791	1.00
114_Y	470_M	0.791	1.00
160_I	381_T	0.790	1.00
186_K	328_L	0.789	1.00
154_I	162_I	0.788	1.00
233_V	236_F	0.788	1.00
405_A	466_N	0.788	1.00
384_G	387_T	0.786	1.00
288_F	291_I	0.786	1.00
113_K	412_K	0.783	1.00
388_I	395_G	0.783	1.00
307_L	310_S	0.783	1.00
458_V	462_A	0.783	1.00
48_L	51_G	0.780	1.00
24_K	28_M	0.779	1.00
452_A	456_L	0.779	1.00
201_L	204_H	0.776	1.00
91_L	266_F	0.775	1.00
7_I	320_G	0.775	1.00
225_T	229_S	0.774	1.00
472_A	475_L	0.773	1.00
392_L	395_G	0.772	1.00
428_G	466_N	0.770	1.00
108_D	112_K	0.768	1.00
212_M	215_Q	0.767	1.00
419_Q	478_R	0.763	1.00
233_V	237_S	0.762	1.00
362_V	366_A	0.761	1.00
391_L	395_G	0.760	1.00
435_I	461_V	0.758	1.00
41_G	265_V	0.757	1.00
378_V	381_T	0.756	1.00
42_T	272_I	0.756	1.00
51_G	256_A	0.755	1.00
55_T	134_Y	0.754	1.00
8_I	327_L	0.754	1.00
375_L	378_V	0.752	1.00
271_I	275_L	0.749	1.00
238_S	241_L	0.749	1.00
463_L	467_I	0.748	1.00
22_A	181_W	0.748	1.00
71_G	288_F	0.748	1.00
450_P	454_K	0.743	1.00
429_V	433_T	0.743	1.00
243_T	249_M	0.742	1.00
463_L	466_N	0.742	1.00
179_S	182_I	0.742	1.00
144_L	147_S	0.740	1.00
449_L	452_A	0.739	1.00
427_A	473_V	0.739	1.00
247_F	250_W	0.738	1.00
224_L	227_P	0.737	1.00
428_G	432_V	0.735	1.00
231_Q	234_A	0.735	1.00
196_F	199_V	0.734	1.00
197_L	306_L	0.731	0.99
197_L	201_L	0.731	0.99
202_P	208_G	0.731	0.99
170_Y	332_V	0.731	0.99
412_K	474_S	0.731	0.99
20_I	23_Q	0.730	0.99
107_S	123_V	0.729	0.99
431_A	435_I	0.726	0.99
191_L	195_L	0.725	0.99
472_A	476_M	0.724	0.99
19_G	23_Q	0.724	0.99
350_Y	355_P	0.722	0.99
467_I	470_M	0.720	0.99
390_T	394_M	0.720	0.99
408_F	412_K	0.720	0.99
468_T	471_M	0.720	0.99
24_K	27_D	0.718	0.99
123_V	402_L	0.717	0.99
243_T	250_W	0.716	0.99
342_S	370_V	0.716	0.99
290_A	309_L	0.715	0.99
417_T	479_K	0.712	0.99
66_A	288_F	0.712	0.99
206_Y	292_L	0.709	0.99
170_Y	186_K	0.709	0.99
317_W	321_I	0.708	0.99
179_S	336_M	0.706	0.99
387_T	390_T	0.703	0.99
243_T	248_Y	0.702	0.99
372_V	376_I	0.701	0.99
170_Y	178_G	0.700	0.99
156_P	160_I	0.698	0.99
20_I	173_V	0.696	0.99
75_Y	79_Y	0.695	0.99
143_G	156_P	0.695	0.99
59_F	194_V	0.695	0.99
239_T	247_F	0.693	0.99
431_A	434_Y	0.692	0.99
455_D	459_G	0.692	0.99
93_A	411_L	0.691	0.99
215_Q	219_A	0.691	0.99
21_R	24_K	0.691	0.99
234_A	238_S	0.690	0.99
119_L	418_K	0.689	0.99
462_A	466_N	0.689	0.99
218_T	221_P	0.689	0.99
55_T	59_F	0.688	0.99
142_L	330_A	0.688	0.99
412_K	417_T	0.687	0.99
21_R	181_W	0.687	0.99
138_Q	333_P	0.687	0.99
240_V	243_T	0.686	0.99
15_S	19_G	0.686	0.99
121_I	124_S	0.686	0.99
20_I	24_K	0.685	0.99
42_T	45_V	0.685	0.99
460_I	464_L	0.680	0.99
457_N	461_V	0.680	0.99
471_M	474_S	0.676	0.99
83_A	86_L	0.675	0.99
309_L	313_A	0.674	0.99
242_L	250_W	0.673	0.99
121_I	349_V	0.672	0.99
345_F	365_L	0.671	0.99
19_G	22_A	0.670	0.99
449_L	453_A	0.670	0.99
404_P	467_I	0.667	0.99
33_W	367_K	0.667	0.99
144_L	303_D	0.666	0.99
286_V	306_L	0.666	0.99
186_K	333_P	0.666	0.99
117_P	120_G	0.665	0.99
412_K	420_G	0.665	0.99
416_V	424_G	0.665	0.99
422_F	426_I	0.665	0.99
396_Y	399_V	0.664	0.99
171_V	335_S	0.662	0.99
80_G	274_P	0.660	0.99
219_A	291_I	0.657	0.99
423_A	426_I	0.657	0.99
337_I	340_S	0.656	0.99
198_G	282_F	0.656	0.99
36_G	259_S	0.656	0.99
393_L	397_S	0.656	0.99
30_L	34_T	0.653	0.99
176_I	180_A	0.652	0.99
140_K	144_L	0.652	0.99
43_V	184_V	0.651	0.99
67_Y	296_D	0.651	0.99
186_K	331_L	0.649	0.99
212_M	289_A	0.649	0.99
456_L	459_G	0.649	0.99
476_M	479_K	0.648	0.99
353_I	356_R	0.646	0.99
7_I	317_W	0.646	0.99
118_L	121_I	0.646	0.99
377_S	381_T	0.646	0.99
245_L	249_M	0.646	0.99
114_Y	408_F	0.645	0.99
74_F	77_I	0.645	0.99
53_I	396_Y	0.644	0.99
15_S	23_Q	0.644	0.99
346_A	362_V	0.642	0.99
271_I	274_P	0.641	0.99
351_K	359_E	0.640	0.99
388_I	400_T	0.639	0.99
104_M	108_D	0.639	0.99
415_M	419_Q	0.638	0.99
33_W	370_V	0.638	0.99
237_S	241_L	0.637	0.99
186_K	332_V	0.637	0.99
59_F	322_I	0.637	0.99
241_L	245_L	0.636	0.99
219_A	223_F	0.636	0.99
285_F	290_A	0.636	0.99
161_W	164_A	0.636	0.99
16_I	169_V	0.630	0.98
159_A	163_G	0.630	0.98
370_V	374_A	0.629	0.98
221_P	225_T	0.629	0.98
206_Y	210_Q	0.629	0.98
428_G	431_A	0.628	0.98
67_Y	305_S	0.624	0.98
394_M	436_T	0.623	0.98
242_L	246_G	0.623	0.98
338_L	370_V	0.621	0.98
46_F	50_A	0.621	0.98
304_L	307_L	0.621	0.98
73_A	78_A	0.621	0.98
477_T	480_A	0.620	0.98
51_G	186_K	0.620	0.98
333_P	337_I	0.620	0.98
48_L	180_A	0.620	0.98
454_K	457_N	0.619	0.98
430_G	433_T	0.616	0.98
85_I	244_A	0.616	0.98
260_A	265_V	0.615	0.98
457_N	460_I	0.615	0.98
65_W	68_G	0.614	0.98
92_P	95_W	0.614	0.98
431_A	462_A	0.613	0.98
151_Y	154_I	0.613	0.98
395_G	399_V	0.612	0.98
134_Y	337_I	0.612	0.98
28_M	32_Q	0.612	0.98
285_F	291_I	0.611	0.98
394_M	433_T	0.610	0.98
89_W	93_A	0.609	0.98
43_V	48_L	0.608	0.98
197_L	322_I	0.605	0.98
45_V	49_M	0.604	0.98
10_G	17_F	0.604	0.98
168_T	371_P	0.602	0.98
392_L	399_V	0.601	0.98
388_I	396_Y	0.601	0.98
475_L	478_R	0.600	0.98
210_Q	215_Q	0.600	0.98
268_K	272_I	0.599	0.98
433_T	437_M	0.599	0.98
94_V	254_F	0.598	0.98
314_F	322_I	0.598	0.98
453_A	461_V	0.598	0.98
195_L	198_G	0.598	0.98
241_L	250_W	0.598	0.98
342_S	366_A	0.597	0.98
395_G	398_L	0.595	0.98
257_S	270_A	0.593	0.98
127_G	344_L	0.593	0.98
415_M	418_K	0.592	0.98
138_Q	334_G	0.591	0.98
161_W	375_L	0.590	0.98
144_L	148_E	0.589	0.98
121_I	125_L	0.589	0.98
40_F	45_V	0.588	0.98
11_V	19_G	0.588	0.98
436_T	458_V	0.586	0.98
346_A	350_Y	0.586	0.98
245_L	250_W	0.585	0.98
146_V	159_A	0.584	0.98
74_F	78_A	0.583	0.97
451_Q	455_D	0.581	0.97
460_I	463_L	0.579	0.97
284_L	287_G	0.579	0.97
41_G	44_F	0.574	0.97
302_G	305_S	0.574	0.97
311_L	319_V	0.573	0.97
237_S	240_V	0.572	0.97
18_L	22_A	0.572	0.97
114_Y	421_A	0.571	0.97
160_I	164_A	0.571	0.97
105_S	348_N	0.570	0.97
235_W	242_L	0.569	0.97
177_H	181_W	0.569	0.97
48_L	183_S	0.569	0.97
50_A	187_D	0.567	0.97
423_A	472_A	0.566	0.97
78_A	81_C	0.566	0.97
231_Q	236_F	0.564	0.97
209_F	212_M	0.563	0.97
135_L	334_G	0.562	0.97
230_G	234_A	0.561	0.97
183_S	332_V	0.560	0.97
234_A	241_L	0.560	0.97
168_T	172_M	0.559	0.97
120_G	124_S	0.557	0.97
58_T	280_L	0.557	0.97
473_V	476_M	0.556	0.97
278_L	282_F	0.556	0.97
404_P	470_M	0.554	0.97
121_I	352_V	0.554	0.97
147_S	155_T	0.552	0.97
238_S	242_L	0.552	0.97
239_T	249_M	0.550	0.96
268_K	271_I	0.549	0.96
212_M	288_F	0.549	0.96
113_K	413_H	0.548	0.96
12_L	16_I	0.547	0.96
148_E	304_L	0.546	0.96
62_G	66_A	0.545	0.96
115_N	119_L	0.545	0.96
220_K	224_L	0.544	0.96
256_A	336_M	0.544	0.96
52_E	171_V	0.544	0.96
77_I	81_C	0.543	0.96
192_V	195_L	0.542	0.96
244_A	248_Y	0.541	0.96
29_N	37_G	0.541	0.96
139_L	178_G	0.541	0.96
51_G	187_D	0.541	0.96
244_A	247_F	0.540	0.96
316_P	319_V	0.539	0.96
394_M	397_S	0.538	0.96
6_I	13_L	0.537	0.96
202_P	209_F	0.536	0.96
44_F	181_W	0.534	0.96
279_V	283_V	0.533	0.96
202_P	285_F	0.532	0.96
164_A	381_T	0.530	0.96
342_S	369_L	0.530	0.96
120_G	352_V	0.529	0.96
241_L	247_F	0.529	0.96
52_E	256_A	0.529	0.96
459_G	466_N	0.528	0.96
90_L	94_V	0.528	0.96
288_F	292_L	0.526	0.95
217_E	220_K	0.526	0.95
32_Q	177_H	0.526	0.95
216_I	288_F	0.524	0.95
179_S	339_M	0.523	0.95
41_G	45_V	0.522	0.95
337_I	402_L	0.522	0.95
119_L	425_I	0.522	0.95
354_A	359_E	0.521	0.95
12_L	19_G	0.521	0.95
233_V	241_L	0.521	0.95
16_I	23_Q	0.521	0.95
371_P	375_L	0.520	0.95
261_E	264_K	0.519	0.95
65_W	389_V	0.518	0.95
454_K	461_V	0.517	0.95
73_A	76_I	0.517	0.95
148_E	308_R	0.516	0.95
389_V	395_G	0.516	0.95
42_T	48_L	0.515	0.95
134_Y	252_H	0.514	0.95
346_A	369_L	0.513	0.95
138_Q	141_G	0.513	0.95
11_V	186_K	0.513	0.95
179_S	256_A	0.512	0.95
146_V	150_S	0.512	0.95
119_L	123_V	0.511	0.95
231_Q	237_S	0.511	0.95
30_L	33_W	0.509	0.95
40_F	259_S	0.509	0.95
376_I	379_Y	0.509	0.95
84_Y	271_I	0.509	0.95
256_A	332_V	0.508	0.95
387_T	395_G	0.508	0.95
331_L	335_S	0.508	0.95
104_M	347_K	0.507	0.94
425_I	428_G	0.506	0.94
30_L	362_V	0.505	0.94
110_F	405_A	0.504	0.94
53_I	277_Q	0.504	0.94
415_M	471_M	0.503	0.94
25_G	28_M	0.503	0.94
57_F	141_G	0.501	0.94
367_K	370_V	0.501	0.94
59_F	64_G	0.501	0.94
194_V	282_F	0.500	0.94
269_N	273_M	0.500	0.94
419_Q	422_F	0.500	0.94

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2xq2A	2	0.9162	100	0.227	Contact Map
3dh4A	3	0.8712	100	0.254	Contact Map
3l1lA	2	0.8344	99.3	0.847	Contact Map
3giaA	1	0.8589	99.2	0.858	Contact Map
4wgvA	2	0.7566	99.1	0.866	Contact Map
4djkA	2	0.8262	98.7	0.883	Contact Map
2jlnA	1	0.8487	98.5	0.89	Contact Map
2wswA	3	0.7935	95	0.934	Contact Map
4us3A	1	0.7955	95	0.934	Contact Map
4c7rA	3	0.8691	94.5	0.935	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0128 seconds.