YVDP - BACSU - GREMLIN Contacts

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YVDP - Uncharacterized FAD-linked oxidoreductase YvdP

UniProt:	O06997	Sequences: MGSTQLTGRVIFKGDPGYTEAIKNWNPYVDVYPLVFVFAQNSYDVSNAIKWARENKVPLRVRSGRHALDKNLSVVSGGIVIDVSDMNKVFLDEENAIATVQTGIPVGPLVKGLARDGFMAPFGDSPTVGIGGITMGGGFGVLSRSIGLISDNLLALKTVDAKGRIIHADQSHNEDLLWASRGGGGGNFGYNTQYTFKVHRAPKTATVFNIIWPWEQLETVFKAWQKWAPFVDERLGCYLEIYSKINGLCHAEGIFLGSKTELIRLLKPLLHAGTPTEADIKTLYYPDAIDFLDPDEPIPGRNDQSVKFSSAWGHDFWSDEPISIMRKFLEDATGTEANFFFINWGGAISRVPKDETAFFWRHPLFYTEWTASWKNKSQEDSNLASVERVRQLMQPYVAGSYVNVPDQNIENFGKEYYGANFARLREIKAKYDPENVFRFPQSIPPSR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	447 (406)
Sequences:	18784 (14333)
Seq/√Len:	711.3

ECOLI - GLCD YGCU YDIJ GLCE
BACSU - YVDP YGAK GLCD YITY
HALSA - Q9HMR2
SULSO - Q97U60 Q97Y18 Q7LX43 Q97U59 Q97ZB9 Q7LXI5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
157_K	193_Q	3.879	1.00
42_S	157_K	3.666	1.00
53_R	434_E	3.630	1.00
134_T	194_Y	3.383	1.00
88_K	101_Q	3.211	1.00
154_L	197_K	3.032	1.00
56_K	434_E	3.016	1.00
92_D	95_N	2.892	1.00
87_N	108_P	2.786	1.00
99_T	193_Q	2.786	1.00
112_G	115_R	2.771	1.00
99_T	195_T	2.753	1.00
157_K	167_H	2.719	1.00
37_V	48_A	2.620	1.00
118_F	198_V	2.615	1.00
158_T	180_S	2.553	1.00
45_V	192_T	2.370	1.00
101_Q	193_Q	2.357	1.00
46_S	165_I	2.341	1.00
155_A	167_H	2.303	1.00
40_Q	85_D	2.288	1.00
104_I	109_L	2.276	1.00
160_D	164_R	2.254	1.00
93_E	116_D	2.237	1.00
49_I	59_L	2.235	1.00
155_A	195_T	2.163	1.00
161_A	437_F	2.098	1.00
216_Q	219_T	2.098	1.00
336_E	339_F	2.070	1.00
51_W	55_N	2.067	1.00
107_G	111_K	2.044	1.00
96_A	118_F	1.975	1.00
160_D	166_I	1.934	1.00
114_A	201_A	1.926	1.00
158_T	189_G	1.911	1.00
392_L	395_P	1.906	1.00
89_V	104_I	1.901	1.00
105_P	108_P	1.893	1.00
98_A	109_L	1.868	1.00
43_Y	46_S	1.857	1.00
267_K	271_H	1.849	1.00
43_Y	47_N	1.827	1.00
157_K	165_I	1.822	1.00
38_F	85_D	1.813	1.00
42_S	165_I	1.808	1.00
42_S	192_T	1.802	1.00
62_R	65_R	1.787	1.00
40_Q	44_D	1.785	1.00
391_Q	395_P	1.782	1.00
90_F	99_T	1.781	1.00
42_S	46_S	1.763	1.00
233_E	236_G	1.763	1.00
113_L	198_V	1.755	1.00
86_M	101_Q	1.738	1.00
45_V	190_Y	1.736	1.00
169_D	172_H	1.722	1.00
81_I	190_Y	1.720	1.00
97_I	195_T	1.718	1.00
156_L	180_S	1.714	1.00
97_I	154_L	1.703	1.00
46_S	50_K	1.699	1.00
100_V	130_I	1.699	1.00
179_A	427_I	1.664	1.00
426_E	430_K	1.662	1.00
83_V	190_Y	1.649	1.00
49_I	437_F	1.646	1.00
380_D	384_A	1.644	1.00
135_M	183_G	1.629	1.00
47_N	50_K	1.628	1.00
343_N	395_P	1.607	1.00
91_L	112_G	1.603	1.00
41_N	44_D	1.602	1.00
234_R	237_C	1.596	1.00
98_A	196_F	1.590	1.00
259_K	263_I	1.590	1.00
233_E	237_C	1.589	1.00
96_A	200_R	1.574	1.00
225_Q	228_A	1.560	1.00
108_P	111_K	1.551	1.00
422_A	425_R	1.545	1.00
429_A	435_N	1.540	1.00
61_V	190_Y	1.521	1.00
384_A	388_R	1.520	1.00
112_G	116_D	1.519	1.00
157_K	192_T	1.519	1.00
229_P	233_E	1.515	1.00
231_V	234_R	1.504	1.00
287_D	290_D	1.498	1.00
52_A	79_I	1.484	1.00
391_Q	415_E	1.477	1.00
134_T	153_L	1.469	1.00
92_D	97_I	1.466	1.00
135_M	191_N	1.464	1.00
83_V	86_M	1.454	1.00
223_A	226_K	1.448	1.00
49_I	53_R	1.445	1.00
408_N	441_Q	1.443	1.00
234_R	238_Y	1.436	1.00
50_K	53_R	1.430	1.00
346_G	350_R	1.418	1.00
180_S	189_G	1.417	1.00
236_G	239_L	1.413	1.00
37_V	79_I	1.411	1.00
306_V	309_S	1.402	1.00
224_W	227_W	1.388	1.00
229_P	232_D	1.381	1.00
422_A	426_E	1.378	1.00
89_V	112_G	1.376	1.00
413_G	417_Y	1.370	1.00
159_V	192_T	1.361	1.00
235_L	238_Y	1.352	1.00
152_N	199_H	1.351	1.00
45_V	159_V	1.350	1.00
134_T	196_F	1.344	1.00
327_K	331_D	1.337	1.00
101_Q	104_I	1.335	1.00
51_W	57_V	1.333	1.00
133_I	149_I	1.327	1.00
230_F	234_R	1.325	1.00
161_A	431_Y	1.318	1.00
100_V	196_F	1.315	1.00
307_K	311_A	1.315	1.00
425_R	429_A	1.305	1.00
324_I	327_K	1.303	1.00
155_A	169_D	1.299	1.00
347_A	350_R	1.290	1.00
423_R	426_E	1.287	1.00
414_K	419_A	1.285	1.00
49_I	190_Y	1.279	1.00
153_L	156_L	1.270	1.00
165_I	192_T	1.268	1.00
387_E	391_Q	1.267	1.00
413_G	416_Y	1.265	1.00
311_A	314_H	1.263	1.00
420_N	423_R	1.252	1.00
306_V	310_S	1.252	1.00
168_A	173_N	1.249	1.00
253_G	256_L	1.243	1.00
39_A	44_D	1.242	1.00
49_I	159_V	1.241	1.00
169_D	173_N	1.226	1.00
383_L	387_E	1.225	1.00
328_F	331_D	1.224	1.00
222_K	226_K	1.221	1.00
128_V	133_I	1.220	1.00
219_T	222_K	1.220	1.00
343_N	346_G	1.217	1.00
290_D	293_D	1.217	1.00
339_F	343_N	1.215	1.00
249_C	253_G	1.211	1.00
168_A	177_L	1.205	1.00
50_K	54_E	1.181	1.00
46_S	159_V	1.179	1.00
45_V	81_I	1.175	1.00
39_A	48_A	1.173	1.00
381_S	384_A	1.169	1.00
38_F	82_D	1.166	1.00
235_L	239_L	1.166	1.00
111_K	115_R	1.160	1.00
303_D	306_V	1.158	1.00
88_K	104_I	1.158	1.00
52_A	59_L	1.156	1.00
428_K	435_N	1.155	1.00
44_D	47_N	1.154	1.00
392_L	396_Y	1.151	1.00
100_V	109_L	1.151	1.00
263_I	267_K	1.149	1.00
375_N	378_Q	1.144	1.00
258_S	261_E	1.140	1.00
270_L	274_T	1.138	1.00
230_F	236_G	1.133	1.00
308_F	311_A	1.129	1.00
303_D	307_K	1.124	1.00
261_E	264_R	1.120	1.00
91_L	98_A	1.120	1.00
98_A	198_V	1.119	1.00
221_F	225_Q	1.111	1.00
59_L	81_I	1.111	1.00
87_N	101_Q	1.111	1.00
231_V	235_L	1.107	1.00
305_S	309_S	1.098	1.00
22_I	25_W	1.097	1.00
48_A	81_I	1.095	1.00
343_N	396_Y	1.088	1.00
159_V	165_I	1.086	1.00
232_D	236_G	1.083	1.00
153_L	181_R	1.078	1.00
303_D	310_S	1.074	1.00
351_V	388_R	1.070	1.00
147_G	151_D	1.068	1.00
230_F	233_E	1.067	1.00
412_F	416_Y	1.060	1.00
56_K	436_V	1.060	1.00
222_K	225_Q	1.059	1.00
268_P	271_H	1.056	1.00
98_A	113_L	1.054	1.00
53_R	436_V	1.050	1.00
421_F	425_R	1.049	1.00
169_D	174_E	1.043	1.00
91_L	118_F	1.042	1.00
326_R	329_L	1.041	1.00
234_R	239_L	1.040	1.00
285_Y	288_A	1.038	1.00
350_R	388_R	1.035	1.00
180_S	191_N	1.033	1.00
48_A	79_I	1.031	1.00
288_A	291_F	1.031	1.00
329_L	332_A	1.025	1.00
309_S	312_W	1.024	1.00
411_N	414_K	1.016	1.00
218_E	222_K	1.016	1.00
303_D	308_F	1.013	1.00
307_K	310_S	1.009	1.00
274_T	277_E	1.007	1.00
229_P	234_R	1.004	1.00
21_A	24_N	1.003	1.00
231_V	236_G	1.002	1.00
224_W	228_A	0.999	1.00
166_I	173_N	0.997	1.00
63_S	129_G	0.994	1.00
35_V	79_I	0.990	1.00
160_D	431_Y	0.988	1.00
249_C	252_E	0.984	1.00
158_T	166_I	0.981	1.00
426_E	429_A	0.980	1.00
175_D	178_W	0.975	1.00
134_T	149_I	0.973	1.00
289_I	293_D	0.960	1.00
343_N	392_L	0.960	1.00
110_V	122_F	0.959	1.00
230_F	237_C	0.955	1.00
229_P	237_C	0.954	1.00
271_H	274_T	0.952	1.00
38_F	84_S	0.952	1.00
108_P	112_G	0.945	1.00
345_G	349_S	0.944	1.00
388_R	391_Q	0.943	1.00
42_S	159_V	0.930	1.00
233_E	350_R	0.930	1.00
71_N	74_V	0.928	1.00
221_F	228_A	0.926	1.00
248_L	251_A	0.924	1.00
326_R	330_E	0.920	1.00
118_F	200_R	0.920	1.00
179_A	188_F	0.920	1.00
62_R	80_V	0.918	1.00
232_D	238_Y	0.918	1.00
231_V	237_C	0.917	1.00
107_G	126_P	0.917	1.00
324_I	331_D	0.916	1.00
136_G	403_N	0.916	1.00
75_V	78_G	0.911	1.00
283_L	287_D	0.911	1.00
233_E	239_L	0.909	1.00
264_R	267_K	0.906	1.00
50_K	164_R	0.903	1.00
376_K	379_E	0.903	1.00
309_S	313_G	0.899	1.00
83_V	102_T	0.899	1.00
58_P	78_G	0.899	1.00
131_G	194_Y	0.899	1.00
232_D	237_C	0.898	1.00
57_V	79_I	0.897	1.00
183_G	188_F	0.896	1.00
232_D	235_L	0.895	1.00
107_G	127_T	0.893	1.00
286_P	289_I	0.892	1.00
42_S	101_Q	0.888	1.00
310_S	313_G	0.888	1.00
284_Y	287_D	0.887	1.00
384_A	387_E	0.886	1.00
178_W	423_R	0.885	1.00
267_K	270_L	0.885	1.00
304_Q	308_F	0.881	1.00
229_P	236_G	0.877	1.00
63_S	83_V	0.875	1.00
412_F	417_Y	0.873	1.00
248_L	253_G	0.871	1.00
156_L	177_L	0.869	1.00
241_I	244_K	0.868	1.00
229_P	238_Y	0.864	1.00
233_E	238_Y	0.861	1.00
346_G	349_S	0.860	1.00
377_S	380_D	0.859	1.00
321_P	324_I	0.855	1.00
59_L	436_V	0.852	1.00
167_H	195_T	0.848	1.00
391_Q	394_Q	0.843	1.00
401_Y	404_V	0.841	1.00
206_T	263_I	0.839	1.00
156_L	194_Y	0.839	1.00
106_V	133_I	0.839	1.00
130_I	196_F	0.839	1.00
401_Y	406_D	0.839	1.00
45_V	86_M	0.836	1.00
174_E	187_N	0.835	1.00
352_P	355_E	0.832	1.00
220_V	224_W	0.830	1.00
221_F	224_W	0.829	1.00
250_H	253_G	0.825	1.00
327_K	330_E	0.822	1.00
323_S	327_K	0.821	1.00
232_D	239_L	0.819	1.00
84_S	129_G	0.819	1.00
324_I	328_F	0.818	1.00
130_I	194_Y	0.816	1.00
305_S	310_S	0.815	1.00
167_H	193_Q	0.815	1.00
288_A	293_D	0.813	1.00
47_N	51_W	0.812	1.00
191_N	194_Y	0.809	1.00
378_Q	381_S	0.809	1.00
92_D	99_T	0.807	1.00
26_N	29_V	0.806	1.00
34_L	77_G	0.806	1.00
305_S	308_F	0.805	1.00
170_Q	174_E	0.805	1.00
168_A	180_S	0.804	1.00
393_M	398_A	0.803	1.00
310_S	314_H	0.803	1.00
153_L	194_Y	0.801	1.00
23_K	27_P	0.801	1.00
262_L	266_L	0.800	1.00
62_R	82_D	0.798	1.00
304_Q	307_K	0.794	1.00
325_M	329_L	0.792	1.00
308_F	312_W	0.788	1.00
45_V	83_V	0.788	1.00
395_P	398_A	0.787	1.00
152_N	197_K	0.782	1.00
419_A	422_A	0.781	1.00
288_A	292_L	0.781	1.00
39_A	83_V	0.780	1.00
289_I	292_L	0.779	1.00
285_Y	292_L	0.777	1.00
64_G	129_G	0.776	1.00
231_V	239_L	0.774	1.00
21_A	25_W	0.773	1.00
229_P	239_L	0.767	1.00
36_F	80_V	0.767	1.00
104_I	108_P	0.766	1.00
291_F	294_P	0.765	1.00
121_P	152_N	0.762	1.00
285_Y	291_F	0.761	1.00
102_T	194_Y	0.760	1.00
42_S	86_M	0.760	1.00
326_R	331_D	0.757	1.00
265_L	268_P	0.757	1.00
154_L	195_T	0.756	1.00
413_G	421_F	0.756	1.00
67_A	72_L	0.755	1.00
134_T	191_N	0.755	1.00
286_P	290_D	0.752	1.00
97_I	197_K	0.751	1.00
417_Y	420_N	0.750	1.00
282_T	288_A	0.750	1.00
106_V	122_F	0.749	1.00
117_G	201_A	0.747	1.00
34_L	78_G	0.744	1.00
422_A	429_A	0.744	1.00
394_Q	415_E	0.744	1.00
98_A	112_G	0.741	1.00
119_M	201_A	0.741	1.00
156_L	191_N	0.740	1.00
162_K	166_I	0.739	1.00
343_N	347_A	0.738	1.00
218_E	221_F	0.738	1.00
271_H	275_P	0.736	1.00
39_A	85_D	0.736	1.00
250_H	255_F	0.736	1.00
217_L	221_F	0.729	1.00
312_W	315_D	0.729	1.00
229_P	235_L	0.726	1.00
244_K	247_G	0.726	1.00
53_R	162_K	0.726	1.00
63_S	102_T	0.725	1.00
347_A	392_L	0.724	1.00
131_G	135_M	0.724	1.00
303_D	309_S	0.723	1.00
58_P	438_R	0.723	1.00
175_D	430_K	0.719	1.00
342_I	346_G	0.717	1.00
42_S	45_V	0.716	1.00
61_V	83_V	0.715	1.00
109_L	130_I	0.715	1.00
269_L	273_G	0.711	1.00
351_V	384_A	0.710	1.00
359_F	362_H	0.708	1.00
231_V	238_Y	0.707	1.00
322_I	325_M	0.706	1.00
249_C	255_F	0.706	1.00
148_L	151_D	0.705	1.00
307_K	314_H	0.704	1.00
217_L	228_A	0.704	1.00
324_I	329_L	0.704	1.00
304_Q	309_S	0.703	1.00
261_E	265_L	0.701	1.00
84_S	105_P	0.700	1.00
161_A	436_V	0.699	1.00
347_A	351_V	0.698	1.00
339_F	342_I	0.697	1.00
386_V	389_V	0.697	1.00
171_S	174_E	0.696	1.00
248_L	254_I	0.694	1.00
170_Q	173_N	0.694	1.00
308_F	314_H	0.693	1.00
323_S	326_R	0.693	1.00
376_K	380_D	0.693	1.00
342_I	345_G	0.692	1.00
260_T	264_R	0.692	1.00
87_N	104_I	0.691	1.00
249_C	254_I	0.690	1.00
268_P	272_A	0.690	1.00
340_F	343_N	0.689	1.00
111_K	114_A	0.687	1.00
248_L	252_E	0.685	1.00
394_Q	398_A	0.684	1.00
43_Y	165_I	0.682	1.00
311_A	316_F	0.680	1.00
305_S	312_W	0.678	1.00
175_D	427_I	0.677	1.00
86_M	192_T	0.677	1.00
155_A	193_Q	0.675	1.00
106_V	109_L	0.672	1.00
380_D	383_L	0.672	1.00
217_L	220_V	0.671	1.00
303_D	311_A	0.670	1.00
283_L	286_P	0.670	1.00
219_T	223_A	0.669	1.00
240_E	244_K	0.669	1.00
428_K	438_R	0.669	1.00
338_N	342_I	0.666	1.00
121_P	199_H	0.666	1.00
23_K	30_D	0.664	1.00
215_E	342_I	0.663	1.00
125_S	128_V	0.661	1.00
290_D	294_P	0.660	1.00
92_D	96_A	0.656	1.00
305_S	313_G	0.656	1.00
91_L	116_D	0.655	1.00
403_N	407_Q	0.654	1.00
393_M	397_V	0.653	1.00
49_I	161_A	0.652	1.00
313_G	316_F	0.651	1.00
264_R	268_P	0.650	1.00
217_L	227_W	0.650	1.00
137_G	148_L	0.648	1.00
266_L	270_L	0.647	1.00
113_L	116_D	0.646	1.00
282_T	285_Y	0.645	1.00
285_Y	289_I	0.643	1.00
216_Q	220_V	0.642	1.00
223_A	228_A	0.642	1.00
286_P	293_D	0.642	1.00
306_V	312_W	0.640	1.00
309_S	315_D	0.640	1.00
412_F	415_E	0.639	1.00
220_V	223_A	0.637	1.00
251_A	255_F	0.637	1.00
106_V	128_V	0.635	1.00
325_M	328_F	0.634	1.00
427_I	431_Y	0.632	1.00
340_F	344_W	0.632	1.00
209_N	212_W	0.632	1.00
309_S	314_H	0.631	1.00
230_F	238_Y	0.631	1.00
249_C	256_L	0.630	1.00
177_L	181_R	0.629	1.00
253_G	257_G	0.629	1.00
218_E	228_A	0.628	1.00
304_Q	310_S	0.628	1.00
208_F	253_G	0.628	1.00
272_A	275_P	0.627	1.00
33_P	80_V	0.626	1.00
306_V	311_A	0.626	1.00
44_D	48_A	0.621	1.00
173_N	431_Y	0.621	1.00
105_P	129_G	0.620	1.00
402_V	405_P	0.617	1.00
305_S	311_A	0.617	1.00
31_V	76_S	0.612	1.00
387_E	411_N	0.612	1.00
213_P	216_Q	0.612	1.00
39_A	45_V	0.609	1.00
96_A	197_K	0.608	1.00
287_D	291_F	0.607	1.00
158_T	168_A	0.607	1.00
305_S	315_D	0.606	1.00
89_V	100_V	0.605	1.00
435_N	438_R	0.604	1.00
286_P	292_L	0.602	1.00
386_V	390_R	0.602	1.00
251_A	254_I	0.600	1.00
323_S	329_L	0.600	1.00
51_W	79_I	0.599	1.00
221_F	227_W	0.598	1.00
252_E	256_L	0.598	1.00
156_L	168_A	0.597	1.00
169_D	177_L	0.596	1.00
272_A	276_T	0.595	1.00
406_D	413_G	0.595	1.00
64_G	105_P	0.594	1.00
220_V	225_Q	0.589	1.00
390_R	394_Q	0.588	1.00
388_R	392_L	0.588	1.00
373_W	379_E	0.587	1.00
399_G	402_V	0.587	1.00
21_A	38_F	0.587	1.00
220_V	227_W	0.587	1.00
240_E	243_S	0.586	1.00
306_V	315_D	0.585	1.00
334_G	337_A	0.585	1.00
270_L	273_G	0.585	1.00
339_F	396_Y	0.584	1.00
236_G	240_E	0.581	1.00
46_S	49_I	0.580	1.00
93_E	118_F	0.579	1.00
283_L	288_A	0.579	1.00
284_Y	291_F	0.579	1.00
167_H	172_H	0.579	1.00
286_P	291_F	0.576	1.00
363_P	366_Y	0.575	1.00
230_F	239_L	0.574	1.00
24_N	27_P	0.571	1.00
254_I	257_G	0.571	1.00
307_K	312_W	0.569	1.00
306_V	314_H	0.569	1.00
375_N	381_S	0.567	1.00
226_K	276_T	0.564	1.00
110_V	119_M	0.564	1.00
284_Y	288_A	0.563	1.00
285_Y	293_D	0.563	1.00
166_I	423_R	0.562	1.00
106_V	130_I	0.560	1.00
188_F	427_I	0.560	1.00
385_S	389_V	0.559	1.00
208_F	211_I	0.559	1.00
230_F	235_L	0.559	1.00
109_L	120_A	0.556	1.00
399_G	404_V	0.556	1.00
223_A	227_W	0.556	1.00
308_F	313_G	0.556	1.00
314_H	317_W	0.554	1.00
183_G	186_G	0.554	1.00
46_S	160_D	0.553	1.00
107_G	125_S	0.553	1.00
310_S	315_D	0.552	1.00
22_I	30_D	0.551	1.00
204_T	259_K	0.551	1.00
321_P	326_R	0.550	1.00
287_D	292_L	0.550	1.00
91_L	198_V	0.550	1.00
93_E	96_A	0.549	1.00
215_E	218_E	0.549	1.00
218_E	323_S	0.546	1.00
240_E	247_G	0.544	1.00
42_S	193_Q	0.543	1.00
354_D	357_A	0.541	1.00
283_L	291_F	0.540	1.00
414_K	417_Y	0.539	1.00
321_P	328_F	0.537	1.00
90_F	97_I	0.537	1.00
123_G	133_I	0.536	1.00
58_P	439_F	0.535	1.00
156_L	181_R	0.534	1.00
337_A	342_I	0.534	1.00
60_R	78_G	0.534	1.00
90_F	93_E	0.534	1.00
379_E	383_L	0.533	1.00
178_W	181_R	0.533	1.00
347_A	388_R	0.533	1.00
250_H	254_I	0.533	1.00
95_N	335_T	0.530	1.00
325_M	331_D	0.530	1.00
421_F	424_L	0.528	1.00
403_N	406_D	0.528	1.00
258_S	264_R	0.528	1.00
143_S	148_L	0.527	1.00
157_K	195_T	0.527	1.00
89_V	101_Q	0.526	1.00
387_E	390_R	0.526	1.00
393_M	396_Y	0.526	1.00
215_E	219_T	0.523	1.00
110_V	201_A	0.523	1.00
281_K	284_Y	0.523	1.00
318_S	321_P	0.521	1.00
377_S	381_S	0.519	1.00
206_T	262_L	0.518	1.00
257_G	261_E	0.518	1.00
260_T	263_I	0.517	1.00
428_K	432_D	0.517	1.00
282_T	287_D	0.516	1.00
319_D	328_F	0.516	1.00
287_D	293_D	0.515	1.00
288_A	294_P	0.512	1.00
217_L	225_Q	0.511	1.00
265_L	273_G	0.510	0.99
222_K	319_D	0.509	0.99
22_I	36_F	0.509	0.99
400_S	404_V	0.509	0.99
217_L	224_W	0.509	0.99
283_L	289_I	0.507	0.99
59_L	79_I	0.504	0.99
120_A	198_V	0.504	0.99
255_F	258_S	0.503	0.99
170_Q	181_R	0.501	0.99
39_A	86_M	0.501	0.99
104_I	130_I	0.500	0.99
140_G	143_S	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4xloA	2	0.9776	100	0.269	Contact Map
2bvfA	1	0.9642	100	0.308	Contact Map
3vteA	1	0.9799	100	0.309	Contact Map
4ud8A	1	0.9911	100	0.312	Contact Map
3rjaA	1	0.9911	100	0.314	Contact Map
4pvkA	1	0.9866	100	0.323	Contact Map
3popA	2	0.9776	100	0.324	Contact Map
2ipiA	1	0.9754	100	0.324	Contact Map
1zr6A	1	0.9866	100	0.327	Contact Map
2y3sA	2	0.9821	100	0.328	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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