YITK - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YITK - UPF0234 protein yitk

UniProt:	O06746	Sequences: MAKESSFDIVSKVELPEVQNAIQIALKEISTRYDFKGSKSDISLDKEELVLVSDDEFKLSQLKDVLVSKLIKRNVPTKNIDYGKVENASGGTVRQRAKLVQGIDKDNAKKINTIIKNSGLKVKSQVQDDQVRVTGKNKDDLQQIISAVRGADLPIDVQFINFR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	163 (157)
Sequences:	1288 (627)
Seq/√Len:	50.0

ECOLI - YAJQ
BACSU - YITK

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
17_E	73_R	3.713	1.00
83_G	98_K	3.608	1.00
40_S	53_S	3.518	1.00
148_V	157_V	3.287	1.00
115_I	144_I	2.981	1.00
112_N	124_S	2.779	1.00
104_D	107_N	2.652	1.00
118_S	147_A	2.576	1.00
70_L	80_I	2.505	1.00
81_D	100_V	2.485	1.00
55_D	58_K	2.468	1.00
9_I	148_V	2.439	1.00
112_N	131_V	2.438	1.00
13_V	99_L	2.326	1.00
24_I	69_K	2.314	1.00
114_I	151_A	2.139	1.00
19_Q	23_Q	2.123	1.00
114_I	153_L	1.959	0.99
115_I	133_V	1.884	0.99
107_N	110_K	1.797	0.99
42_I	62_L	1.778	0.99
113_T	117_N	1.766	0.99
59_L	95_Q	1.765	0.99
16_P	19_Q	1.735	0.99
70_L	75_V	1.715	0.99
130_Q	160_I	1.710	0.99
22_I	66_L	1.654	0.98
112_N	116_K	1.613	0.98
48_E	96_R	1.606	0.98
88_A	94_R	1.583	0.98
124_S	131_V	1.575	0.97
51_L	62_L	1.562	0.97
12_K	129_D	1.544	0.97
29_I	62_L	1.540	0.97
23_Q	27_K	1.531	0.97
85_V	93_V	1.517	0.97
52_V	92_T	1.513	0.97
103_I	108_A	1.507	0.97
74_N	149_R	1.499	0.97
127_Q	130_Q	1.498	0.97
138_K	162_F	1.491	0.96
64_D	68_S	1.469	0.96
18_V	70_L	1.461	0.96
111_I	131_V	1.454	0.96
80_I	97_A	1.427	0.95
28_E	69_K	1.408	0.95
12_K	160_I	1.374	0.94
51_L	59_L	1.338	0.94
10_V	160_I	1.319	0.93
81_D	98_K	1.311	0.93
63_K	67_V	1.311	0.93
65_V	69_K	1.308	0.93
25_A	42_I	1.302	0.93
107_N	155_I	1.299	0.92
140_D	143_Q	1.271	0.92
56_E	72_K	1.270	0.92
57_F	61_Q	1.264	0.91
115_I	124_S	1.233	0.90
51_L	97_A	1.231	0.90
12_K	130_Q	1.221	0.90
48_E	98_K	1.211	0.90
9_I	133_V	1.201	0.89
50_V	96_R	1.195	0.89
78_K	154_P	1.166	0.88
22_I	44_L	1.163	0.88
136_K	140_D	1.136	0.86
63_K	82_Y	1.129	0.86
67_V	77_T	1.120	0.86
114_I	117_N	1.118	0.85
88_A	93_V	1.107	0.85
29_I	36_K	1.093	0.84
47_E	101_Q	1.093	0.84
112_N	123_K	1.085	0.84
103_I	131_V	1.062	0.82
80_I	99_L	1.038	0.81
90_G	93_V	1.030	0.80
35_F	58_K	1.024	0.80
111_I	153_L	1.006	0.79
28_E	73_R	1.005	0.79
105_K	128_D	0.998	0.78
85_V	95_Q	0.994	0.78
41_D	52_V	0.984	0.77
9_I	131_V	0.983	0.77
53_S	92_T	0.969	0.76
146_S	150_G	0.965	0.76
17_E	28_E	0.939	0.74
71_I	77_T	0.938	0.74
116_K	123_K	0.923	0.73
10_V	102_G	0.919	0.72
25_A	62_L	0.916	0.72
18_V	75_V	0.912	0.72
114_I	147_A	0.908	0.71
107_N	154_P	0.886	0.69
138_K	163_R	0.878	0.69
11_S	102_G	0.872	0.68
39_K	92_T	0.871	0.68
114_I	118_S	0.864	0.67
26_L	41_D	0.864	0.67
44_L	99_L	0.860	0.67
143_Q	150_G	0.854	0.67
56_E	85_V	0.851	0.66
45_D	48_E	0.845	0.66
76_P	156_D	0.845	0.66
61_Q	76_P	0.843	0.66
100_V	107_N	0.840	0.65
75_V	79_N	0.786	0.60
69_K	74_N	0.785	0.60
13_V	79_N	0.768	0.58
77_T	80_I	0.764	0.58
63_K	95_Q	0.763	0.58
49_L	80_I	0.760	0.57
122_V	135_G	0.757	0.57
79_N	156_D	0.756	0.57
57_F	65_V	0.748	0.56
49_L	99_L	0.746	0.56
137_N	140_D	0.744	0.56
122_V	140_D	0.742	0.56
97_A	100_V	0.737	0.55
11_S	158_Q	0.736	0.55
17_E	69_K	0.732	0.55
110_K	114_I	0.730	0.54
27_K	128_D	0.721	0.54
26_L	30_S	0.719	0.53
88_A	92_T	0.714	0.53
149_R	159_F	0.714	0.53
37_G	54_D	0.712	0.53
13_V	158_Q	0.708	0.52
119_G	135_G	0.708	0.52
105_K	116_K	0.704	0.52
18_V	49_L	0.704	0.52
18_V	99_L	0.704	0.52
45_D	50_V	0.702	0.52
125_Q	134_T	0.701	0.51
107_N	153_L	0.700	0.51
103_I	124_S	0.686	0.50
42_I	66_L	0.686	0.50
117_N	125_Q	0.673	0.49
19_Q	44_L	0.673	0.49
16_P	23_Q	0.672	0.49
150_G	153_L	0.671	0.48
39_K	54_D	0.667	0.48
33_Y	67_V	0.666	0.48
72_K	138_K	0.663	0.48
71_I	74_N	0.663	0.48
81_D	84_K	0.663	0.48
118_S	144_I	0.659	0.47
41_D	99_L	0.654	0.47
61_Q	65_V	0.653	0.47
43_S	150_G	0.652	0.46
120_L	135_G	0.651	0.46
129_D	160_I	0.644	0.46
24_I	73_R	0.642	0.45
27_K	87_N	0.642	0.45
54_D	92_T	0.639	0.45
27_K	94_R	0.636	0.45
16_P	75_V	0.633	0.45
79_N	101_Q	0.631	0.44
145_I	159_F	0.629	0.44
136_K	153_L	0.629	0.44
15_L	44_L	0.628	0.44
36_K	92_T	0.626	0.44
112_N	126_V	0.624	0.44
49_L	66_L	0.623	0.44
15_L	18_V	0.622	0.43
60_S	64_D	0.617	0.43
41_D	49_L	0.612	0.42
120_L	147_A	0.612	0.42
104_D	126_V	0.611	0.42
38_S	53_S	0.611	0.42
145_I	160_I	0.611	0.42
59_L	85_V	0.610	0.42
82_Y	97_A	0.610	0.42
69_K	73_R	0.607	0.42
26_L	40_S	0.605	0.42
33_Y	137_N	0.599	0.41
72_K	125_Q	0.598	0.41
9_I	115_I	0.598	0.41
103_I	111_I	0.594	0.41
38_S	55_D	0.585	0.40
51_L	67_V	0.583	0.40
87_N	93_V	0.583	0.40
118_S	143_Q	0.580	0.39
17_E	24_I	0.577	0.39
36_K	157_V	0.575	0.39
18_V	79_N	0.575	0.39
55_D	93_V	0.568	0.38
23_Q	58_K	0.568	0.38
37_G	135_G	0.568	0.38
33_Y	61_Q	0.567	0.38
123_K	135_G	0.566	0.38
104_D	110_K	0.564	0.38
37_G	137_N	0.564	0.38
79_N	100_V	0.561	0.37
13_V	75_V	0.560	0.37
112_N	125_Q	0.558	0.37
43_S	52_V	0.556	0.37
100_V	155_I	0.556	0.37
104_D	154_P	0.555	0.37
17_E	20_N	0.555	0.37
123_K	137_N	0.553	0.37
29_I	89_S	0.552	0.37
44_L	47_E	0.551	0.36
29_I	84_K	0.549	0.36
13_V	101_Q	0.549	0.36
84_K	87_N	0.548	0.36
110_K	151_A	0.542	0.36
98_K	104_D	0.541	0.36
38_S	54_D	0.538	0.35
67_V	82_Y	0.529	0.34
69_K	163_R	0.528	0.34
105_K	131_V	0.527	0.34
148_V	155_I	0.525	0.34
87_N	96_R	0.524	0.34
35_F	54_D	0.524	0.34
123_K	131_V	0.523	0.34
108_A	126_V	0.523	0.34
146_S	162_F	0.519	0.33
83_G	96_R	0.519	0.33
31_T	36_K	0.519	0.33
40_S	62_L	0.517	0.33
69_K	72_K	0.517	0.33
36_K	88_A	0.516	0.33
105_K	109_K	0.515	0.33
119_G	144_I	0.513	0.33
60_S	95_Q	0.513	0.33
24_I	77_T	0.512	0.33
39_K	91_G	0.512	0.33
107_N	157_V	0.511	0.33
24_I	36_K	0.511	0.33
76_P	137_N	0.510	0.33
117_N	147_A	0.507	0.32
106_D	109_K	0.507	0.32
12_K	101_Q	0.506	0.32
60_S	85_V	0.506	0.32
50_V	98_K	0.502	0.32
58_K	61_Q	0.500	0.32

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1in0A	1	0.9755	100	0.049	Contact Map
1gtdA	3	0.4479	17.3	0.958	Contact Map
1yj7A	3	0.3988	14.7	0.96	Contact Map
2yqrA	1	0.4908	14.5	0.96	Contact Map
2dgbA	2	0.4417	13.2	0.96	Contact Map
2yx5A	4	0.4479	12.3	0.961	Contact Map
1tv8A	2	0.8957	11.8	0.961	Contact Map
4djgA	2	0.319	10.3	0.962	Contact Map
1zmaA	1	0.3988	10.2	0.962	Contact Map
4trtA	2	0.7423	9.7	0.963	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0064 seconds.