CYSC2 - BACSU - GREMLIN Contacts

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CYSC2 - Probable adenylyl-sulfate kinase

UniProt:	O06735	Sequences: MTHNPNIIWHPAAISKSDRQSLNGHKSCVLWFTGLSGSGKSVLANAVDEKLYRKGIQSYVLDGDNIRHGLNKDLGFQTGDRIENIRRIGEVAKLFVDSGQMILTAFISPFREDRDMVRALFPKGEFFEIYVKCPLHVCEQRDPKGLYKKARNGEIKHFTGIDSPYEAPLSPDFIIESDQTSISDGADLIINALQNRGII	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	199 (176)
Sequences:	2695 (1636)
Seq/√Len:	123.3

ECOLI - CYSC
BACSU - CYSC2 CYSC1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
139_E	151_R	4.185	1.00
137_V	140_Q	3.935	1.00
89_G	117_V	2.808	1.00
180_T	188_L	2.768	1.00
132_K	174_I	2.635	1.00
110_F	163_S	2.628	1.00
29_V	121_F	2.582	1.00
23_N	57_Q	2.499	1.00
180_T	185_G	2.340	1.00
59_Y	97_D	2.287	1.00
156_K	162_D	2.284	1.00
134_P	178_D	2.269	1.00
157_H	162_D	2.225	1.00
29_V	96_V	2.178	1.00
132_K	176_E	2.172	1.00
115_D	119_A	2.160	1.00
50_K	187_D	2.070	1.00
111_R	169_L	2.048	1.00
175_I	185_G	2.030	1.00
32_F	103_L	2.006	1.00
77_Q	80_D	2.005	1.00
181_S	184_D	1.993	1.00
88_I	106_F	1.988	1.00
127_F	192_A	1.976	1.00
56_I	101_M	1.945	1.00
66_I	88_I	1.931	1.00
47_V	189_I	1.926	1.00
46_A	182_I	1.918	1.00
70_L	91_V	1.914	1.00
30_L	129_I	1.889	1.00
176_E	179_Q	1.884	1.00
149_K	154_E	1.874	1.00
54_K	194_Q	1.863	1.00
132_K	167_A	1.818	1.00
118_R	172_D	1.775	1.00
182_I	186_A	1.712	1.00
134_P	137_V	1.700	1.00
20_Q	27_S	1.698	1.00
133_C	138_C	1.688	1.00
78_T	163_S	1.649	1.00
130_Y	174_I	1.626	1.00
78_T	110_F	1.598	1.00
50_K	54_K	1.590	1.00
148_K	152_N	1.563	1.00
111_R	115_D	1.519	1.00
95_F	100_Q	1.440	1.00
46_A	186_A	1.439	1.00
75_G	80_D	1.431	1.00
96_V	121_F	1.429	1.00
187_D	191_N	1.397	1.00
50_K	186_A	1.393	1.00
47_V	186_A	1.370	1.00
50_K	53_R	1.342	1.00
25_H	56_I	1.331	1.00
22_L	52_Y	1.325	1.00
82_I	113_D	1.303	1.00
83_E	86_R	1.292	1.00
177_S	185_G	1.277	1.00
173_F	192_A	1.266	1.00
43_L	131_V	1.249	1.00
175_I	189_I	1.240	0.99
43_L	186_A	1.212	0.99
116_M	119_A	1.171	0.99
43_L	175_I	1.169	0.99
135_L	139_E	1.147	0.99
77_Q	157_H	1.136	0.99
45_N	60_V	1.126	0.99
22_L	57_Q	1.120	0.99
130_Y	167_A	1.104	0.99
31_W	108_S	1.103	0.99
46_A	49_E	1.093	0.99
27_S	96_V	1.091	0.99
191_N	195_N	1.086	0.99
117_V	126_F	1.082	0.99
69_G	90_E	1.072	0.98
133_C	177_S	1.065	0.98
151_R	161_I	1.063	0.98
82_I	112_E	1.038	0.98
47_V	190_I	1.029	0.98
36_S	107_I	1.023	0.98
133_C	137_V	1.021	0.98
93_K	120_L	1.020	0.98
46_A	50_K	1.012	0.98
49_E	53_R	1.009	0.98
29_V	92_A	1.007	0.98
137_V	178_D	0.993	0.97
48_D	103_L	0.993	0.97
89_G	120_L	0.993	0.97
66_I	106_F	0.991	0.97
111_R	167_A	0.971	0.97
28_C	101_M	0.959	0.97
115_D	169_L	0.958	0.97
158_F	162_D	0.951	0.97
122_P	125_E	0.951	0.97
85_I	106_F	0.940	0.96
59_Y	98_S	0.929	0.96
128_E	171_P	0.926	0.96
85_I	117_V	0.925	0.96
35_L	138_C	0.921	0.96
28_C	193_L	0.918	0.96
33_T	165_Y	0.917	0.96
136_H	140_Q	0.898	0.95
48_D	60_V	0.893	0.95
20_Q	26_K	0.883	0.95
127_F	173_F	0.883	0.95
54_K	190_I	0.876	0.95
157_H	163_S	0.875	0.95
50_K	190_I	0.873	0.95
188_L	191_N	0.870	0.95
182_I	185_G	0.868	0.95
46_A	183_S	0.867	0.94
135_L	161_I	0.867	0.94
65_N	68_H	0.861	0.94
133_C	178_D	0.861	0.94
37_G	143_P	0.857	0.94
121_F	125_E	0.855	0.94
108_S	126_F	0.853	0.94
47_V	103_L	0.848	0.94
191_N	194_Q	0.846	0.94
95_F	98_S	0.840	0.94
37_G	146_L	0.838	0.93
48_D	52_Y	0.831	0.93
26_K	125_E	0.830	0.93
121_F	124_G	0.824	0.93
139_E	161_I	0.822	0.93
171_P	174_I	0.813	0.92
20_Q	23_N	0.806	0.92
188_L	192_A	0.804	0.92
20_Q	125_E	0.803	0.92
135_L	151_R	0.797	0.92
25_H	57_Q	0.791	0.91
50_K	183_S	0.790	0.91
30_L	47_V	0.784	0.91
180_T	184_D	0.779	0.91
110_F	113_D	0.772	0.90
96_V	125_E	0.767	0.90
69_G	83_E	0.766	0.90
133_C	174_I	0.760	0.90
90_E	93_K	0.756	0.89
127_F	172_D	0.755	0.89
110_F	164_P	0.748	0.89
118_R	126_F	0.747	0.89
74_L	80_D	0.745	0.89
158_F	161_I	0.737	0.88
63_G	144_K	0.733	0.88
117_V	120_L	0.726	0.87
28_C	127_F	0.725	0.87
181_S	185_G	0.724	0.87
45_N	48_D	0.720	0.87
82_I	116_M	0.712	0.86
83_E	90_E	0.705	0.86
43_L	185_G	0.704	0.86
119_A	123_K	0.699	0.85
23_N	27_S	0.697	0.85
36_S	146_L	0.697	0.85
21_S	24_G	0.690	0.85
111_R	166_E	0.686	0.84
45_N	102_I	0.684	0.84
130_Y	176_E	0.684	0.84
186_A	189_I	0.683	0.84
36_S	135_L	0.677	0.83
112_E	116_M	0.664	0.82
92_A	104_T	0.663	0.82
72_K	120_L	0.662	0.82
22_L	58_S	0.661	0.82
184_D	187_D	0.659	0.82
78_T	112_E	0.655	0.81
48_D	58_S	0.655	0.81
69_G	73_D	0.647	0.81
65_N	90_E	0.646	0.81
78_T	82_I	0.643	0.80
74_L	87_R	0.640	0.80
159_T	163_S	0.639	0.80
104_T	117_V	0.637	0.80
32_F	44_A	0.634	0.79
33_T	108_S	0.633	0.79
192_A	195_N	0.631	0.79
129_I	173_F	0.630	0.79
127_F	193_L	0.624	0.78
59_Y	95_F	0.624	0.78
150_A	162_D	0.623	0.78
34_G	39_G	0.616	0.77
167_A	176_E	0.613	0.77
23_N	52_Y	0.609	0.77
104_T	107_I	0.605	0.76
60_V	105_A	0.604	0.76
173_F	188_L	0.603	0.76
139_E	150_A	0.603	0.76
89_G	121_F	0.603	0.76
78_T	157_H	0.600	0.75
42_V	182_I	0.600	0.75
72_K	116_M	0.599	0.75
73_D	87_R	0.598	0.75
52_Y	58_S	0.597	0.75
111_R	128_E	0.596	0.75
128_E	170_S	0.591	0.74
64_D	144_K	0.590	0.74
47_V	193_L	0.588	0.74
74_L	84_N	0.586	0.74
32_F	131_V	0.586	0.74
109_P	159_T	0.582	0.73
92_A	96_V	0.580	0.73
108_S	128_E	0.580	0.73
155_I	158_F	0.578	0.73
118_R	128_E	0.577	0.73
107_I	159_T	0.577	0.73
147_Y	160_G	0.575	0.72
85_I	110_F	0.574	0.72
107_I	163_S	0.567	0.71
108_S	165_Y	0.566	0.71
185_G	188_L	0.566	0.71
33_T	126_F	0.566	0.71
28_C	102_I	0.565	0.71
30_L	193_L	0.563	0.71
29_V	105_A	0.562	0.71
31_W	128_E	0.561	0.71
173_F	189_I	0.561	0.71
45_N	49_E	0.558	0.70
20_Q	25_H	0.557	0.70
187_D	194_Q	0.553	0.69
27_S	125_E	0.552	0.69
48_D	65_N	0.551	0.69
126_F	165_Y	0.551	0.69
66_I	70_L	0.550	0.69
84_N	88_I	0.550	0.69
146_L	158_F	0.548	0.69
79_G	82_I	0.548	0.69
111_R	165_Y	0.547	0.69
84_N	87_R	0.544	0.68
28_C	96_V	0.543	0.68
32_F	43_L	0.542	0.68
142_D	145_G	0.541	0.68
121_F	126_F	0.541	0.68
45_N	58_S	0.538	0.67
24_G	194_Q	0.538	0.67
86_R	113_D	0.537	0.67
65_N	94_L	0.536	0.67
42_V	64_D	0.533	0.67
44_A	105_A	0.530	0.66
126_F	172_D	0.530	0.66
35_L	160_G	0.527	0.66
143_P	148_K	0.524	0.65
49_E	112_E	0.522	0.65
116_M	120_L	0.521	0.65
144_K	159_T	0.520	0.65
49_E	52_Y	0.520	0.65
76_F	107_I	0.520	0.65
61_L	102_I	0.520	0.65
29_V	104_T	0.519	0.65
179_Q	188_L	0.516	0.64
59_Y	96_V	0.516	0.64
190_I	194_Q	0.516	0.64
86_R	90_E	0.514	0.64
26_K	188_L	0.512	0.64
89_G	110_F	0.512	0.64
96_V	122_P	0.510	0.63
30_L	103_L	0.510	0.63
24_G	56_I	0.510	0.63
172_D	192_A	0.509	0.63
93_K	97_D	0.508	0.63
44_A	73_D	0.504	0.62
117_V	121_F	0.502	0.62
138_C	151_R	0.502	0.62
29_V	117_V	0.500	0.62

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1x6vB	2	0.9196	100	0.432	Contact Map
1m8pA	5	1	100	0.493	Contact Map
2gksA	2	1	100	0.503	Contact Map
1m7gA	4	0.9849	100	0.534	Contact Map
3cr8A	4	0.8693	100	0.537	Contact Map
4rfvA	2	0.7085	100	0.58	Contact Map
2pezA	2	0.8794	100	0.6	Contact Map
2yvuA	2	0.8844	100	0.613	Contact Map
4bzpA	2	0.8593	100	0.613	Contact Map
3uieA	2	0.9749	99.9	0.646	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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