GERPC - BACSU - GREMLIN Contacts

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GERPC - Probable spore germination protein GerPC

UniProt:	O06719	Sequences: MYDQSVSSYLQNLNSFVQQQAIHIQQLERQLKEIQTEMNTMKQRPATTIERVEYKFDQLKIERLDGTLNIGLNPTDPNSVQNFDVSQSTPQIGMMQQEESAQLMQQIRQNVDMYLTEEIPDILEQLENQYDSRLDDTNRHHVIEDIRKQMDSRIHYYMSHIKKEENTPPAQYAEHIAEHVKRDVIRAVEHFLEHIPSEMKGDEQA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	205 (189)
Sequences:	121 (99)
Seq/√Len:	7.2

BACSU - GERPC

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
183_D	187_A	3.781	0.95
73_N	191_F	3.217	0.88
61_I	80_V	3.157	0.87
144_E	148_K	2.871	0.82
27_L	58_Q	2.685	0.77
17_V	148_K	2.500	0.71
73_N	196_P	2.250	0.63
127_E	134_L	2.246	0.63
72_L	191_F	2.241	0.62
61_I	180_V	2.141	0.59
138_N	191_F	2.089	0.57
55_K	83_F	2.078	0.56
148_K	183_D	2.074	0.56
24_I	27_L	1.976	0.52
43_Q	81_Q	1.934	0.51
141_H	191_F	1.913	0.50
7_S	73_N	1.901	0.49
115_L	146_I	1.869	0.48
191_F	196_P	1.843	0.47
10_L	13_L	1.834	0.47
127_E	130_Y	1.811	0.46
127_E	183_D	1.801	0.46
20_Q	65_D	1.789	0.45
69_N	158_M	1.786	0.45
17_V	32_K	1.689	0.41
188_V	192_L	1.642	0.39
127_E	139_R	1.621	0.39
98_E	118_E	1.615	0.38
110_N	129_Q	1.608	0.38
45_P	80_V	1.604	0.38
162_K	176_I	1.585	0.37
22_I	176_I	1.579	0.37
20_Q	24_I	1.579	0.37
52_V	58_Q	1.552	0.36
82_N	138_N	1.542	0.36
80_V	83_F	1.537	0.36
19_Q	65_D	1.533	0.35
27_L	49_I	1.520	0.35
31_L	34_I	1.513	0.35
133_R	144_E	1.509	0.35
37_E	42_K	1.496	0.34
61_I	150_M	1.485	0.34
39_N	42_K	1.481	0.34
154_I	176_I	1.460	0.33
111_V	177_A	1.454	0.33
113_M	129_Q	1.433	0.32
141_H	158_M	1.404	0.31
61_I	85_V	1.397	0.31
111_V	154_I	1.380	0.30
110_N	173_A	1.370	0.30
43_Q	85_V	1.345	0.29
157_Y	183_D	1.343	0.29
10_L	76_D	1.331	0.29
116_T	147_R	1.330	0.29
187_A	192_L	1.329	0.29
134_L	139_R	1.326	0.28
46_A	150_M	1.315	0.28
47_T	52_V	1.310	0.28
159_S	192_L	1.304	0.28
144_E	147_R	1.257	0.26
142_V	188_V	1.242	0.26
17_V	75_T	1.241	0.26
27_L	50_E	1.227	0.25
156_Y	159_S	1.202	0.25
45_P	129_Q	1.195	0.25
23_H	28_E	1.192	0.24
39_N	43_Q	1.190	0.24
118_E	181_K	1.181	0.24
9_Y	191_F	1.164	0.24
107_I	111_V	1.160	0.24
47_T	187_A	1.156	0.23
49_I	119_I	1.151	0.23
131_D	183_D	1.131	0.23
34_I	142_V	1.114	0.22
19_Q	49_I	1.102	0.22
152_S	159_S	1.102	0.22
55_K	196_P	1.099	0.22
11_Q	148_K	1.098	0.22
24_I	176_I	1.097	0.22
61_I	111_V	1.093	0.22
141_H	196_P	1.082	0.21
77_P	143_I	1.055	0.21
69_N	73_N	1.045	0.20
49_I	58_Q	1.043	0.20
50_E	58_Q	1.037	0.20
16_F	19_Q	1.030	0.20
78_N	83_F	1.016	0.20
80_V	195_I	1.015	0.20
151_D	180_V	1.012	0.20
146_I	193_E	1.012	0.20
38_M	41_M	1.003	0.19
14_N	129_Q	1.003	0.19
65_D	188_V	0.997	0.19
58_Q	81_Q	0.985	0.19
50_E	187_A	0.979	0.19
127_E	133_R	0.965	0.19
34_I	124_E	0.963	0.18
69_N	191_F	0.962	0.18
150_M	180_V	0.955	0.18
10_L	16_F	0.953	0.18
111_V	183_D	0.950	0.18
49_I	77_P	0.949	0.18
56_F	64_L	0.945	0.18
56_F	59_L	0.945	0.18
60_K	64_L	0.945	0.18
56_F	66_G	0.945	0.18
56_F	60_K	0.945	0.18
66_G	149_Q	0.945	0.18
59_L	149_Q	0.945	0.18
56_F	71_G	0.945	0.18
56_F	145_D	0.945	0.18
59_L	71_G	0.945	0.18
59_L	66_G	0.945	0.18
59_L	64_L	0.945	0.18
59_L	145_D	0.945	0.18
71_G	145_D	0.945	0.18
56_F	149_Q	0.945	0.18
60_K	66_G	0.945	0.18
66_G	71_G	0.945	0.18
64_L	145_D	0.945	0.18
64_L	71_G	0.945	0.18
54_Y	66_G	0.945	0.18
64_L	149_Q	0.945	0.18
66_G	145_D	0.945	0.18
60_K	149_Q	0.945	0.18
54_Y	59_L	0.945	0.18
54_Y	60_K	0.945	0.18
145_D	149_Q	0.945	0.18
54_Y	149_Q	0.945	0.18
54_Y	145_D	0.945	0.18
54_Y	71_G	0.945	0.18
60_K	71_G	0.945	0.18
60_K	145_D	0.945	0.18
54_Y	64_L	0.945	0.18
71_G	149_Q	0.945	0.18
42_K	73_N	0.931	0.18
28_E	52_V	0.926	0.18
69_N	85_V	0.914	0.17
12_N	152_S	0.910	0.17
146_I	189_E	0.898	0.17
44_R	135_D	0.883	0.17
40_T	114_Y	0.882	0.17
28_E	115_L	0.881	0.17
18_Q	109_Q	0.870	0.16
47_T	50_E	0.862	0.16
158_M	172_Y	0.861	0.16
158_M	177_A	0.858	0.16
49_I	126_L	0.854	0.16
108_R	187_A	0.854	0.16
14_N	192_L	0.852	0.16
62_E	70_I	0.850	0.16
105_Q	117_E	0.848	0.16
138_N	147_R	0.847	0.16
119_I	139_R	0.844	0.16
28_E	85_V	0.842	0.16
40_T	158_M	0.842	0.16
107_I	192_L	0.841	0.16
20_Q	62_E	0.837	0.16
16_F	154_I	0.828	0.16
69_N	155_H	0.825	0.15
107_I	158_M	0.823	0.15
155_H	179_H	0.816	0.15
85_V	196_P	0.815	0.15
40_T	150_M	0.806	0.15
20_Q	148_K	0.803	0.15
86_S	107_I	0.802	0.15
103_L	162_K	0.800	0.15
139_R	183_D	0.790	0.15
61_I	179_H	0.789	0.15
49_I	92_I	0.787	0.15
114_Y	128_N	0.786	0.15
134_L	194_H	0.785	0.15
127_E	154_I	0.778	0.15
72_L	142_V	0.771	0.14
142_V	175_H	0.768	0.14
81_Q	107_I	0.767	0.14
11_Q	192_L	0.766	0.14
122_I	185_I	0.765	0.14
45_P	191_F	0.763	0.14
126_L	130_Y	0.763	0.14
93_G	122_I	0.757	0.14
50_E	184_V	0.751	0.14
63_R	113_M	0.744	0.14
55_K	129_Q	0.743	0.14
37_E	136_D	0.732	0.14
17_V	33_E	0.718	0.13
160_H	192_L	0.713	0.13
93_G	193_E	0.712	0.13
136_D	183_D	0.711	0.13
39_N	162_K	0.711	0.13
69_N	196_P	0.701	0.13
50_E	188_V	0.699	0.13
45_P	142_V	0.699	0.13
109_Q	180_V	0.699	0.13
26_Q	179_H	0.691	0.13
13_L	17_V	0.690	0.13
31_L	121_D	0.689	0.13
107_I	175_H	0.686	0.13
22_I	118_E	0.683	0.13
9_Y	24_I	0.678	0.13
142_V	196_P	0.678	0.13
11_Q	17_V	0.672	0.13
178_E	184_V	0.671	0.13
80_V	86_S	0.670	0.13
72_L	146_I	0.664	0.12
49_I	161_I	0.661	0.12
62_E	181_K	0.661	0.12
141_H	195_I	0.659	0.12
59_L	68_L	0.658	0.12
64_L	68_L	0.658	0.12
60_K	68_L	0.658	0.12
56_F	68_L	0.658	0.12
54_Y	68_L	0.658	0.12
68_L	149_Q	0.658	0.12
68_L	145_D	0.658	0.12
68_L	71_G	0.658	0.12
58_Q	187_A	0.653	0.12
21_A	73_N	0.653	0.12
48_T	176_I	0.652	0.12
20_Q	53_E	0.643	0.12
32_K	170_A	0.641	0.12
72_L	180_V	0.641	0.12
10_L	34_I	0.636	0.12
17_V	115_L	0.635	0.12
119_I	133_R	0.635	0.12
49_I	143_I	0.633	0.12
36_T	176_I	0.632	0.12
140_H	144_E	0.625	0.12
79_S	83_F	0.624	0.12
37_E	84_D	0.624	0.12
186_R	196_P	0.622	0.12
73_N	141_H	0.619	0.12
31_L	103_L	0.617	0.12
9_Y	14_N	0.615	0.12
29_R	33_E	0.614	0.12
6_V	191_F	0.610	0.12
47_T	58_Q	0.608	0.12
80_V	138_N	0.603	0.11
79_S	90_P	0.603	0.11
47_T	146_I	0.602	0.11
47_T	116_T	0.602	0.11
29_R	99_E	0.599	0.11
33_E	120_P	0.597	0.11
151_D	155_H	0.593	0.11
125_Q	129_Q	0.591	0.11
135_D	157_Y	0.586	0.11
51_R	178_E	0.584	0.11
73_N	165_E	0.580	0.11
154_I	183_D	0.577	0.11
104_M	180_V	0.576	0.11
157_Y	180_V	0.564	0.11
105_Q	123_L	0.563	0.11
125_Q	143_I	0.560	0.11
39_N	98_E	0.559	0.11
85_V	191_F	0.556	0.11
121_D	159_S	0.554	0.11
49_I	151_D	0.553	0.11
72_L	122_I	0.553	0.11
57_D	84_D	0.542	0.11
42_K	61_I	0.540	0.10
79_S	154_I	0.538	0.10
23_H	111_V	0.536	0.10
108_R	183_D	0.533	0.10
158_M	173_A	0.533	0.10
47_T	82_N	0.530	0.10
35_Q	188_V	0.528	0.10
64_L	67_T	0.521	0.10
59_L	67_T	0.521	0.10
54_Y	67_T	0.521	0.10
67_T	145_D	0.521	0.10
60_K	67_T	0.521	0.10
67_T	71_G	0.521	0.10
56_F	67_T	0.521	0.10
67_T	149_Q	0.521	0.10
55_K	133_R	0.520	0.10
53_E	143_I	0.515	0.10
167_T	192_L	0.513	0.10
42_K	118_E	0.509	0.10
93_G	157_Y	0.505	0.10
23_H	177_A	0.503	0.10
70_I	149_Q	0.500	0.10
60_K	70_I	0.500	0.10
56_F	70_I	0.500	0.10
59_L	70_I	0.500	0.10

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1nlwA	1	0.1951	43.4	0.951	Contact Map
4y66A	1	0.6439	42.1	0.951	Contact Map
2akfA	3	0.1561	40	0.952	Contact Map
1nkpB	1	0.2146	34	0.954	Contact Map
2pnvA	5	0.1902	27.5	0.956	Contact Map
1nkpA	1	0.2146	25.3	0.957	Contact Map
3e1rA	2	0.1561	22.7	0.958	Contact Map
2rawB	1	0.2488	22.2	0.958	Contact Map
3iynQ	5	0.2293	21.8	0.958	Contact Map
4iffA	2	0.2049	18.2	0.96	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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