YFNF - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YFNF - Uncharacterized protein YfnF

UniProt:	O06484	Sequences: MTSAYCTVLSKGRLYQAVALFKSLEQVDQDSPIFILCMDEDTHRVLQKLKMKQLNLVPVAALENELLLKLKETRDQSEYCWTMKPIFLQAVLNSNPELERVTYIDGDLFFYADPSPIFENQPDCSVLLSRGDIVIPSFEKEQIDMLQRLLGRYNSGFISFKHDDAGTDCLEWWKERCLEECKNAPGEGKFGDQGYLDYMSELFPNVCDITTPGVNIGHWNYGQHTFSWKDGRIVLEDGSPLIFYHFSGYRIVSINEIKQIHETTRTDLPFVHELYQETLPHIIQHMQTLDPEFNGFASKDDNK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	303 (281)
Sequences:	304 (272)
Seq/√Len:	16.2

BACSU - YFNF YFND

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
36_L	87_F	4.360	1.00
81_W	191_G	3.609	1.00
153_Y	206_V	3.382	0.99
32_P	98_L	3.134	0.99
10_S	80_C	3.077	0.99
100_R	122_P	3.076	0.99
155_S	196_L	3.016	0.98
125_S	163_D	2.982	0.98
157_F	243_F	2.911	0.98
107_D	245_H	2.788	0.97
156_G	215_N	2.706	0.97
102_T	159_S	2.688	0.97
81_W	155_S	2.623	0.96
131_G	154_N	2.604	0.96
228_W	270_F	2.396	0.94
13_R	107_D	2.297	0.92
9_L	17_A	2.289	0.92
84_K	215_N	2.242	0.91
89_Q	171_E	2.235	0.91
71_K	79_Y	2.151	0.89
108_L	243_F	2.113	0.88
131_G	217_G	2.112	0.88
32_P	55_N	2.096	0.88
81_W	196_L	2.071	0.87
154_N	215_N	1.998	0.85
19_A	282_I	1.974	0.85
81_W	106_G	1.963	0.84
194_G	197_D	1.936	0.83
106_G	155_S	1.918	0.83
56_L	152_R	1.870	0.81
254_I	258_K	1.825	0.79
4_A	34_F	1.808	0.79
86_I	174_K	1.800	0.78
6_C	88_L	1.793	0.78
7_T	23_S	1.745	0.76
6_C	87_F	1.716	0.75
85_P	170_L	1.693	0.74
156_G	247_S	1.668	0.73
13_R	155_S	1.658	0.72
64_N	174_K	1.656	0.72
89_Q	174_K	1.652	0.72
11_K	39_D	1.642	0.72
70_L	74_R	1.640	0.71
84_K	156_G	1.635	0.71
117_I	214_V	1.634	0.71
152_R	201_E	1.633	0.71
212_P	239_S	1.629	0.71
169_C	196_L	1.614	0.70
200_S	208_D	1.592	0.69
162_H	167_T	1.577	0.68
107_D	181_C	1.564	0.68
172_W	188_G	1.562	0.68
81_W	245_H	1.551	0.67
107_D	154_N	1.547	0.67
84_K	247_S	1.542	0.67
9_L	180_E	1.495	0.64
153_Y	196_L	1.490	0.64
10_S	155_S	1.485	0.64
89_Q	93_N	1.484	0.64
87_F	92_L	1.480	0.63
231_G	235_L	1.480	0.63
84_K	155_S	1.478	0.63
81_W	177_C	1.474	0.63
107_D	243_F	1.466	0.63
154_N	245_H	1.462	0.62
131_G	247_S	1.454	0.62
13_R	181_C	1.442	0.61
198_Y	202_L	1.438	0.61
181_C	245_H	1.417	0.60
80_C	191_G	1.413	0.60
165_A	168_D	1.411	0.59
212_P	238_G	1.387	0.58
77_S	154_N	1.381	0.58
21_F	33_I	1.363	0.57
126_V	203_F	1.357	0.56
37_C	56_L	1.345	0.56
164_D	168_D	1.337	0.55
81_W	107_D	1.332	0.55
96_P	162_H	1.320	0.54
5_Y	28_D	1.319	0.54
130_R	189_K	1.316	0.54
244_Y	257_I	1.314	0.54
107_D	131_G	1.310	0.54
163_D	166_G	1.307	0.54
131_G	243_F	1.302	0.53
215_N	247_S	1.299	0.53
88_L	170_L	1.293	0.53
94_S	168_D	1.282	0.52
103_Y	172_W	1.275	0.52
126_V	169_C	1.268	0.51
203_F	206_V	1.263	0.51
151_G	275_Y	1.259	0.51
40_E	60_A	1.248	0.50
213_G	241_L	1.245	0.50
7_T	39_D	1.244	0.50
5_Y	24_L	1.240	0.50
154_N	243_F	1.239	0.50
5_Y	31_S	1.235	0.49
8_V	74_R	1.226	0.49
74_R	82_T	1.223	0.49
241_L	246_F	1.222	0.49
81_W	154_N	1.221	0.49
13_R	131_G	1.221	0.49
107_D	194_G	1.221	0.49
5_Y	160_F	1.219	0.48
115_S	119_E	1.218	0.48
62_L	83_M	1.205	0.48
121_Q	127_L	1.199	0.47
13_R	245_H	1.185	0.46
154_N	247_S	1.180	0.46
203_F	216_I	1.173	0.46
128_L	184_A	1.173	0.46
172_W	203_F	1.172	0.46
74_R	147_Q	1.166	0.45
19_A	211_T	1.165	0.45
26_Q	66_L	1.157	0.45
129_S	215_N	1.155	0.45
171_E	277_E	1.155	0.45
74_R	195_Y	1.138	0.44
7_T	20_L	1.134	0.43
129_S	157_F	1.132	0.43
131_G	155_S	1.129	0.43
74_R	218_H	1.128	0.43
105_D	219_W	1.118	0.43
101_V	157_F	1.113	0.42
113_D	240_P	1.107	0.42
125_S	205_N	1.105	0.42
19_A	110_F	1.098	0.41
94_S	229_K	1.094	0.41
34_F	208_D	1.091	0.41
65_E	211_T	1.091	0.41
35_I	54_L	1.081	0.40
10_S	84_K	1.068	0.40
229_K	232_R	1.061	0.39
92_L	167_T	1.060	0.39
283_I	287_Q	1.049	0.39
85_P	173_W	1.047	0.39
150_L	183_N	1.040	0.38
105_D	151_G	1.037	0.38
107_D	215_N	1.034	0.38
176_R	249_Y	1.030	0.38
227_S	238_G	1.027	0.37
13_R	217_G	1.027	0.37
13_R	81_W	1.024	0.37
249_Y	276_Q	1.023	0.37
77_S	81_W	1.020	0.37
36_L	88_L	1.015	0.37
153_Y	255_N	1.000	0.36
106_G	191_G	0.999	0.36
38_M	80_C	0.997	0.36
74_R	160_F	0.996	0.36
169_C	199_M	0.993	0.36
14_L	279_L	0.978	0.35
88_L	158_I	0.978	0.35
57_V	225_T	0.977	0.35
153_Y	168_D	0.976	0.35
116_P	178_L	0.976	0.35
127_L	157_F	0.963	0.34
106_G	189_K	0.963	0.34
92_L	248_G	0.961	0.34
102_T	155_S	0.960	0.34
176_R	203_F	0.959	0.34
171_E	175_E	0.958	0.34
83_M	196_L	0.949	0.33
20_L	33_I	0.949	0.33
82_T	177_C	0.948	0.33
8_V	80_C	0.947	0.33
147_Q	260_I	0.946	0.33
124_C	161_K	0.946	0.33
7_T	14_L	0.937	0.33
190_F	197_D	0.937	0.33
115_S	162_H	0.935	0.33
121_Q	172_W	0.935	0.33
84_K	172_W	0.927	0.32
130_R	224_H	0.924	0.32
91_V	98_L	0.914	0.31
61_A	65_E	0.912	0.31
108_L	224_H	0.911	0.31
85_P	106_G	0.909	0.31
109_F	278_T	0.906	0.31
82_T	181_C	0.900	0.31
126_V	286_M	0.898	0.31
107_D	155_S	0.896	0.31
191_G	196_L	0.895	0.31
92_L	162_H	0.887	0.30
17_A	161_K	0.881	0.30
238_G	270_F	0.880	0.30
151_G	193_Q	0.880	0.30
6_C	202_L	0.873	0.29
105_D	245_H	0.867	0.29
8_V	156_G	0.866	0.29
172_W	192_D	0.864	0.29
33_I	70_L	0.862	0.29
74_R	126_V	0.858	0.29
160_F	166_G	0.858	0.29
8_V	215_N	0.855	0.29
131_G	245_H	0.854	0.29
92_L	185_P	0.852	0.28
166_G	199_M	0.849	0.28
238_G	246_F	0.844	0.28
108_L	197_D	0.840	0.28
104_I	154_N	0.839	0.28
117_I	204_P	0.838	0.28
107_D	219_W	0.837	0.28
22_K	281_H	0.836	0.28
70_L	82_T	0.831	0.27
28_D	113_D	0.828	0.27
90_A	93_N	0.827	0.27
88_L	92_L	0.823	0.27
151_G	192_D	0.817	0.27
278_T	281_H	0.815	0.27
76_Q	83_M	0.813	0.27
163_D	205_N	0.811	0.27
105_D	157_F	0.810	0.27
40_E	67_L	0.809	0.26
84_K	159_S	0.806	0.26
10_S	191_G	0.795	0.26
20_L	251_I	0.793	0.26
16_Q	218_H	0.793	0.26
156_G	200_S	0.790	0.26
126_V	160_F	0.788	0.26
284_Q	288_T	0.787	0.25
23_S	235_L	0.778	0.25
125_S	165_A	0.775	0.25
84_K	105_D	0.773	0.25
11_K	42_T	0.771	0.25
105_D	220_N	0.769	0.25
26_Q	91_V	0.767	0.25
93_N	277_E	0.766	0.25
76_Q	84_K	0.766	0.25
204_P	210_T	0.765	0.25
66_L	164_D	0.761	0.24
81_W	173_W	0.757	0.24
135_I	165_A	0.755	0.24
202_L	217_G	0.749	0.24
155_S	191_G	0.748	0.24
37_C	195_Y	0.743	0.24
144_D	195_Y	0.742	0.24
78_E	176_R	0.741	0.23
155_S	217_G	0.733	0.23
5_Y	14_L	0.733	0.23
8_V	159_S	0.731	0.23
38_M	83_M	0.728	0.23
104_I	249_Y	0.727	0.23
82_T	195_Y	0.726	0.23
130_R	152_R	0.726	0.23
93_N	111_Y	0.726	0.23
120_N	127_L	0.725	0.23
86_I	101_V	0.724	0.23
225_T	231_G	0.724	0.23
120_N	207_C	0.721	0.23
92_L	160_F	0.720	0.23
36_L	129_S	0.720	0.23
25_E	53_Q	0.720	0.23
155_S	177_C	0.720	0.23
209_I	214_V	0.719	0.23
107_D	193_Q	0.716	0.22
22_K	26_Q	0.715	0.22
31_S	235_L	0.715	0.22
8_V	155_S	0.714	0.22
123_D	126_V	0.709	0.22
13_R	243_F	0.708	0.22
154_N	248_G	0.705	0.22
83_M	155_S	0.702	0.22
32_P	153_Y	0.701	0.22
48_K	52_K	0.700	0.22
157_F	247_S	0.698	0.22
269_P	273_E	0.697	0.22
180_E	184_A	0.695	0.22
167_T	171_E	0.694	0.22
154_N	181_C	0.694	0.22
166_G	197_D	0.693	0.22
99_E	115_S	0.693	0.22
77_S	155_S	0.689	0.21
230_D	281_H	0.686	0.21
66_L	168_D	0.683	0.21
8_V	191_G	0.682	0.21
24_L	33_I	0.682	0.21
27_V	228_W	0.680	0.21
125_S	166_G	0.678	0.21
62_L	215_N	0.678	0.21
230_D	285_H	0.676	0.21
226_F	234_V	0.673	0.21
161_K	176_R	0.670	0.21
78_E	219_W	0.665	0.20
59_V	67_L	0.663	0.20
24_L	244_Y	0.661	0.20
117_I	127_L	0.660	0.20
254_I	257_I	0.659	0.20
97_E	162_H	0.658	0.20
220_N	224_H	0.657	0.20
74_R	223_Q	0.656	0.20
105_D	172_W	0.656	0.20
92_L	97_E	0.654	0.20
24_L	31_S	0.653	0.20
134_V	244_Y	0.653	0.20
84_K	154_N	0.650	0.20
195_Y	203_F	0.650	0.20
135_I	158_I	0.648	0.20
107_D	247_S	0.645	0.20
9_L	79_Y	0.645	0.20
27_V	283_I	0.644	0.20
117_I	209_I	0.641	0.20
193_Q	275_Y	0.639	0.19
33_I	211_T	0.638	0.19
209_I	212_P	0.636	0.19
131_G	214_V	0.635	0.19
154_N	157_F	0.629	0.19
68_L	71_K	0.628	0.19
83_M	117_I	0.624	0.19
105_D	243_F	0.620	0.19
159_S	210_T	0.619	0.19
159_S	164_D	0.619	0.19
78_E	107_D	0.613	0.19
218_H	260_I	0.612	0.19
168_D	279_L	0.612	0.19
9_L	183_N	0.610	0.18
8_V	218_H	0.609	0.18
88_L	160_F	0.607	0.18
107_D	192_D	0.607	0.18
21_F	31_S	0.604	0.18
177_C	196_L	0.602	0.18
84_K	130_R	0.600	0.18
148_R	215_N	0.599	0.18
35_I	87_F	0.599	0.18
81_W	195_Y	0.599	0.18
241_L	271_V	0.599	0.18
121_Q	131_G	0.596	0.18
129_S	172_W	0.596	0.18
12_G	155_S	0.594	0.18
128_L	210_T	0.593	0.18
147_Q	150_L	0.592	0.18
13_R	190_F	0.592	0.18
191_G	245_H	0.591	0.18
181_C	275_Y	0.588	0.18
127_L	273_E	0.587	0.18
84_K	128_L	0.585	0.18
69_K	242_I	0.585	0.18
71_K	191_G	0.585	0.18
215_N	220_N	0.583	0.18
105_D	131_G	0.582	0.17
68_L	153_Y	0.582	0.17
63_E	132_D	0.582	0.17
94_S	225_T	0.580	0.17
225_T	278_T	0.577	0.17
129_S	260_I	0.577	0.17
120_N	211_T	0.577	0.17
205_N	263_T	0.576	0.17
171_E	229_K	0.576	0.17
74_R	79_Y	0.575	0.17
76_Q	81_W	0.575	0.17
6_C	36_L	0.574	0.17
17_A	21_F	0.572	0.17
216_I	237_D	0.570	0.17
55_N	75_D	0.570	0.17
144_D	203_F	0.567	0.17
88_L	103_Y	0.567	0.17
171_E	264_T	0.567	0.17
107_D	156_G	0.566	0.17
6_C	9_L	0.565	0.17
107_D	177_C	0.564	0.17
100_R	159_S	0.564	0.17
69_K	281_H	0.563	0.17
217_G	243_F	0.561	0.17
194_G	208_D	0.561	0.17
100_R	126_V	0.561	0.17
254_I	261_H	0.559	0.17
132_D	147_Q	0.555	0.17
105_D	217_G	0.554	0.17
197_D	254_I	0.552	0.16
19_A	109_F	0.552	0.16
52_K	117_I	0.548	0.16
14_L	112_A	0.547	0.16
38_M	150_L	0.546	0.16
76_Q	80_C	0.544	0.16
90_A	94_S	0.544	0.16
121_Q	130_R	0.542	0.16
128_L	159_S	0.541	0.16
205_N	237_D	0.541	0.16
179_E	288_T	0.540	0.16
181_C	193_Q	0.540	0.16
65_E	161_K	0.538	0.16
56_L	99_E	0.537	0.16
152_R	157_F	0.536	0.16
35_I	39_D	0.535	0.16
49_L	52_K	0.535	0.16
181_C	190_F	0.535	0.16
69_K	268_L	0.533	0.16
231_G	246_F	0.531	0.16
85_P	288_T	0.529	0.16
189_K	194_G	0.529	0.16
74_R	181_C	0.528	0.16
51_M	54_L	0.524	0.16
110_F	114_P	0.524	0.16
74_R	252_V	0.523	0.16
28_D	114_P	0.522	0.16
257_I	271_V	0.521	0.16
250_R	254_I	0.520	0.15
30_D	33_I	0.520	0.15
102_T	141_E	0.518	0.15
156_G	159_S	0.517	0.15
74_R	132_D	0.516	0.15
33_I	244_Y	0.516	0.15
76_Q	196_L	0.513	0.15
14_L	17_A	0.513	0.15
56_L	111_Y	0.511	0.15
30_D	243_F	0.511	0.15
15_Y	130_R	0.511	0.15
13_R	103_Y	0.509	0.15
165_A	210_T	0.509	0.15
105_D	193_Q	0.508	0.15
103_Y	160_F	0.506	0.15
24_L	181_C	0.505	0.15
103_Y	192_D	0.505	0.15
98_L	162_H	0.504	0.15
226_F	237_D	0.503	0.15
231_G	287_Q	0.503	0.15
167_T	280_P	0.502	0.15
126_V	195_Y	0.501	0.15
111_Y	132_D	0.501	0.15
7_T	12_G	0.501	0.15
9_L	155_S	0.500	0.15

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3tztA	2	0.7492	99.8	0.801	Contact Map
1g9rA	1	0.8614	99.8	0.812	Contact Map
4uegA	4	0.7888	99.6	0.836	Contact Map
1ll2A	2	0.7921	99.6	0.843	Contact Map
3u2uA	2	0.8053	99.5	0.845	Contact Map
2p6wA	1	0.6139	97.9	0.915	Contact Map
1xhbA	1	0.8746	65.7	0.961	Contact Map
4mixA	1	0.7426	48.6	0.964	Contact Map
3zf8A	2	0.7393	48	0.965	Contact Map
2d7iA	1	0.901	42.2	0.966	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.01 seconds.