YFNE - BACSU - GREMLIN Contacts

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YFNE - Uncharacterized glycosyltransferase YfnE

UniProt:	O06483	Sequences: MKASVIIPAYNSKERLYNSLLSLNQQECDEEFEVIVADNGSEDGTLSMLESFQADFPLIFTRIKENRGIAYGRNQALRNARGDILIFHDSDMLAAKDLVAKHIKAHENEENLVVCGLFWKRIYSFYYERFEEEHKEQLAKLTGEMPKKDKQKLLEEADIKNGSFLDKSFDLDTDFIDVLKKILDEYGDDLKGYHMPWRFFITNNSSVKRKHVVDLGLFDEGIVRYGFEDYDLGIRLHQAGLTFRLRRDIVSVHQEHPSNCKSVDDIRANIAYMCDKYNNIRSLDVHLAFNGPFPPDMTNRIMADIQKLLESQKYDMLLNLFLELLHVVKERNIDPDWRKKSPRVTAKSFDLQTVRKLLPKAKKKLGVNDFANALYALVNDLLHVDLRSLDVV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	392 (322)
Sequences:	693 (659)
Seq/√Len:	36.7

ECOLI - YIBD
BACSU - YFNE GGAB GGAA CGED TAGF EPSH EPSJ

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
9_A	45_T	5.230	1.00
156_E	160_K	4.839	1.00
27_E	100_A	4.419	1.00
73_R	89_D	3.597	1.00
7_I	23_L	3.509	1.00
28_C	31_E	3.496	1.00
73_R	87_F	3.462	1.00
28_C	103_I	3.361	1.00
17_Y	51_S	3.355	1.00
18_N	199_F	3.015	1.00
12_S	90_S	2.921	1.00
11_N	41_S	2.859	1.00
36_V	49_L	2.700	1.00
86_I	99_V	2.687	1.00
4_S	82_G	2.654	1.00
23_L	88_H	2.570	1.00
63_I	72_G	2.561	1.00
7_I	19_S	2.516	1.00
83_D	107_E	2.500	1.00
46_L	49_L	2.486	1.00
64_K	67_R	2.478	1.00
21_L	52_F	2.465	1.00
33_E	82_G	2.461	1.00
4_S	33_E	2.454	1.00
34_V	59_I	2.429	1.00
16_L	45_T	2.411	1.00
40_G	58_L	2.405	1.00
3_A	99_V	2.310	0.99
10_Y	66_N	2.290	0.99
4_S	80_A	2.256	0.99
28_C	32_F	2.250	0.99
159_I	177_D	2.248	0.99
13_K	44_G	2.192	0.99
75_Q	79_N	2.162	0.99
40_G	59_I	2.162	0.99
40_G	64_K	2.119	0.99
17_Y	21_L	2.116	0.99
3_A	103_I	2.064	0.99
3_A	153_L	1.988	0.98
77_L	85_L	1.980	0.98
38_D	46_L	1.977	0.98
46_L	63_I	1.887	0.98
70_A	74_N	1.883	0.98
12_S	201_I	1.880	0.98
58_L	62_R	1.872	0.98
40_G	62_R	1.855	0.98
44_G	47_S	1.839	0.97
59_I	62_R	1.830	0.97
38_D	63_I	1.824	0.97
33_E	80_A	1.811	0.97
32_F	99_V	1.807	0.97
112_L	116_G	1.807	0.97
67_R	71_Y	1.801	0.97
100_A	104_K	1.798	0.97
5_V	23_L	1.755	0.97
73_R	173_T	1.742	0.96
87_F	173_T	1.724	0.96
97_D	101_K	1.718	0.96
46_L	50_E	1.662	0.95
40_G	72_G	1.618	0.94
39_N	66_N	1.613	0.94
6_I	76_A	1.605	0.94
58_L	64_K	1.602	0.94
9_A	36_V	1.575	0.94
38_D	41_S	1.564	0.93
201_I	204_N	1.558	0.93
37_A	72_G	1.554	0.93
6_I	37_A	1.551	0.93
92_M	174_D	1.547	0.93
7_I	88_H	1.544	0.93
94_A	98_L	1.539	0.93
101_K	193_Y	1.532	0.93
11_N	42_E	1.528	0.93
37_A	76_A	1.498	0.92
59_I	64_K	1.489	0.92
50_E	63_I	1.481	0.91
3_A	28_C	1.476	0.91
19_S	93_L	1.457	0.91
61_T	79_N	1.454	0.91
69_I	173_T	1.452	0.91
166_D	169_F	1.450	0.90
39_N	89_D	1.409	0.89
31_E	103_I	1.394	0.89
177_D	181_K	1.388	0.88
36_V	45_T	1.365	0.88
28_C	83_D	1.360	0.87
157_A	161_N	1.359	0.87
64_K	71_Y	1.359	0.87
12_S	15_R	1.346	0.87
13_K	48_M	1.343	0.87
98_L	102_H	1.342	0.87
20_L	34_V	1.341	0.87
152_K	173_T	1.336	0.86
16_L	52_F	1.332	0.86
70_A	73_R	1.293	0.85
95_A	197_W	1.273	0.84
26_Q	92_M	1.269	0.83
88_H	94_A	1.267	0.83
39_N	68_G	1.263	0.83
20_L	24_N	1.258	0.83
102_H	106_H	1.247	0.82
154_L	178_V	1.245	0.82
89_D	173_T	1.227	0.81
111_N	116_G	1.218	0.81
9_A	49_L	1.216	0.81
53_Q	56_F	1.213	0.81
38_D	62_R	1.209	0.80
21_L	51_S	1.196	0.80
106_H	153_L	1.194	0.79
24_N	52_F	1.191	0.79
39_N	72_G	1.182	0.79
158_D	185_E	1.159	0.77
62_R	75_Q	1.151	0.77
86_I	98_L	1.139	0.76
8_P	90_S	1.110	0.74
19_S	94_A	1.103	0.74
88_H	98_L	1.102	0.74
69_I	73_R	1.099	0.73
16_L	47_S	1.095	0.73
196_P	199_F	1.085	0.73
80_A	156_E	1.071	0.72
39_N	73_R	1.063	0.71
70_A	89_D	1.061	0.71
26_Q	32_F	1.056	0.70
70_A	173_T	1.053	0.70
9_A	90_S	1.050	0.70
102_H	153_L	1.047	0.70
45_T	90_S	1.037	0.69
154_L	181_K	1.034	0.69
70_A	172_D	1.034	0.69
4_S	7_I	1.032	0.69
23_L	94_A	1.029	0.68
17_Y	52_F	1.029	0.68
82_G	85_L	1.026	0.68
112_L	117_L	1.018	0.68
99_V	153_L	1.017	0.68
159_I	181_K	1.012	0.67
173_T	196_P	1.011	0.67
113_V	116_G	1.008	0.67
69_I	169_F	1.006	0.67
103_I	106_H	1.005	0.67
3_A	102_H	1.004	0.66
77_L	80_A	1.004	0.66
36_V	46_L	1.003	0.66
314_Y	317_L	1.001	0.66
40_G	60_F	1.000	0.66
24_N	56_F	0.997	0.66
37_A	61_T	0.997	0.66
111_N	114_V	0.990	0.65
11_N	45_T	0.985	0.65
109_E	189_D	0.981	0.65
105_A	189_D	0.977	0.64
9_A	16_L	0.972	0.64
105_A	109_E	0.968	0.64
19_S	88_H	0.966	0.63
165_L	168_S	0.966	0.63
158_D	181_K	0.965	0.63
69_I	89_D	0.964	0.63
25_Q	100_A	0.962	0.63
8_P	73_R	0.960	0.63
28_C	56_F	0.951	0.62
3_A	26_Q	0.947	0.62
26_Q	30_E	0.945	0.62
94_A	196_P	0.944	0.62
64_K	75_Q	0.942	0.61
16_L	36_V	0.938	0.61
72_G	89_D	0.937	0.61
312_Q	317_L	0.936	0.61
84_I	92_M	0.933	0.61
92_M	196_P	0.933	0.61
19_S	90_S	0.927	0.60
9_A	12_S	0.926	0.60
58_L	61_T	0.925	0.60
78_R	187_G	0.924	0.60
69_I	87_F	0.918	0.59
38_D	66_N	0.916	0.59
45_T	63_I	0.915	0.59
35_I	61_T	0.913	0.59
76_A	80_A	0.912	0.59
321_F	324_L	0.911	0.59
10_Y	39_N	0.910	0.59
19_S	45_T	0.910	0.59
148_K	151_Q	0.903	0.58
20_L	36_V	0.899	0.58
48_M	52_F	0.896	0.58
3_A	27_E	0.896	0.58
324_L	327_V	0.896	0.58
169_F	172_D	0.889	0.57
181_K	185_E	0.887	0.57
88_H	196_P	0.884	0.57
115_C	195_M	0.884	0.57
74_N	77_L	0.883	0.56
49_L	63_I	0.880	0.56
38_D	69_I	0.880	0.56
6_I	80_A	0.874	0.56
84_I	91_D	0.874	0.56
94_A	99_V	0.870	0.55
111_N	117_L	0.863	0.55
37_A	79_N	0.860	0.54
32_F	56_F	0.857	0.54
67_R	72_G	0.856	0.54
10_Y	41_S	0.855	0.54
152_K	185_E	0.843	0.53
86_I	94_A	0.842	0.53
47_S	50_E	0.839	0.53
164_F	179_L	0.835	0.52
12_S	66_N	0.829	0.52
7_I	34_V	0.827	0.52
40_G	61_T	0.824	0.51
150_K	173_T	0.823	0.51
23_L	36_V	0.819	0.51
202_T	205_S	0.819	0.51
10_Y	13_K	0.819	0.51
24_N	34_V	0.818	0.51
43_D	74_N	0.813	0.50
65_E	85_L	0.809	0.50
6_I	85_L	0.805	0.50
6_I	77_L	0.803	0.49
18_N	93_L	0.802	0.49
19_S	106_H	0.799	0.49
312_Q	321_F	0.797	0.49
19_S	172_D	0.795	0.49
95_A	195_M	0.795	0.49
317_L	321_F	0.794	0.49
9_A	38_D	0.790	0.48
58_L	63_I	0.789	0.48
318_L	322_L	0.788	0.48
119_W	124_S	0.787	0.48
149_D	152_K	0.786	0.48
149_D	178_V	0.785	0.48
69_I	149_D	0.777	0.47
64_K	72_G	0.775	0.47
310_E	317_L	0.774	0.47
37_A	172_D	0.774	0.47
122_I	127_Y	0.770	0.47
315_D	318_L	0.769	0.46
83_D	86_I	0.769	0.46
147_K	175_F	0.767	0.46
49_L	61_T	0.767	0.46
15_R	84_I	0.766	0.46
72_G	181_K	0.765	0.46
59_I	63_I	0.764	0.46
20_L	31_E	0.763	0.46
5_V	139_A	0.761	0.46
34_V	45_T	0.759	0.46
323_E	327_V	0.758	0.46
150_K	201_I	0.753	0.45
19_S	34_V	0.753	0.45
12_S	45_T	0.750	0.45
26_Q	31_E	0.750	0.45
154_L	159_I	0.744	0.44
209_R	213_V	0.743	0.44
28_C	99_V	0.737	0.44
169_F	179_L	0.736	0.44
168_S	172_D	0.733	0.43
106_H	152_K	0.732	0.43
185_E	188_D	0.731	0.43
36_V	110_E	0.731	0.43
110_E	155_E	0.730	0.43
269_N	272_Y	0.725	0.43
112_L	115_C	0.723	0.43
45_T	48_M	0.722	0.42
41_S	66_N	0.721	0.42
150_K	154_L	0.720	0.42
4_S	31_E	0.719	0.42
319_N	322_L	0.718	0.42
16_L	24_N	0.718	0.42
179_L	185_E	0.716	0.42
26_Q	100_A	0.714	0.42
8_P	174_D	0.713	0.42
20_L	52_F	0.711	0.41
235_R	273_M	0.711	0.41
311_S	318_L	0.710	0.41
23_L	32_F	0.710	0.41
303_A	306_Q	0.709	0.41
24_N	32_F	0.708	0.41
42_E	75_Q	0.704	0.41
322_L	327_V	0.704	0.41
86_I	153_L	0.702	0.41
10_Y	45_T	0.695	0.40
38_D	72_G	0.690	0.40
13_K	66_N	0.689	0.40
92_M	198_R	0.688	0.40
6_I	128_E	0.686	0.39
69_I	72_G	0.685	0.39
312_Q	319_N	0.685	0.39
262_S	285_V	0.684	0.39
20_L	49_L	0.684	0.39
173_T	201_I	0.683	0.39
39_N	92_M	0.683	0.39
57_P	161_N	0.681	0.39
40_G	65_E	0.680	0.39
5_V	99_V	0.679	0.39
3_A	32_F	0.678	0.39
289_F	311_S	0.678	0.39
58_L	93_L	0.677	0.39
59_I	67_R	0.676	0.39
37_A	189_D	0.675	0.38
69_I	205_S	0.671	0.38
74_N	164_F	0.670	0.38
26_Q	91_D	0.669	0.38
313_K	322_L	0.669	0.38
160_K	222_I	0.668	0.38
3_A	19_S	0.667	0.38
172_D	176_I	0.665	0.38
323_E	326_H	0.665	0.38
165_L	169_F	0.665	0.38
55_D	59_I	0.664	0.38
99_V	156_E	0.659	0.37
89_D	92_M	0.657	0.37
39_N	198_R	0.656	0.37
319_N	324_L	0.654	0.37
114_V	117_L	0.653	0.37
113_V	117_L	0.652	0.37
87_F	177_D	0.649	0.36
229_D	234_I	0.649	0.36
69_I	171_L	0.648	0.36
274_C	283_L	0.647	0.36
69_I	172_D	0.646	0.36
64_K	68_G	0.645	0.36
45_T	68_G	0.645	0.36
20_L	23_L	0.644	0.36
134_H	138_L	0.643	0.36
80_A	154_L	0.643	0.36
123_Y	158_D	0.641	0.36
15_R	201_I	0.640	0.36
5_V	17_Y	0.639	0.36
36_V	73_R	0.637	0.35
15_R	124_S	0.636	0.35
52_F	55_D	0.636	0.35
105_A	108_N	0.634	0.35
4_S	85_L	0.630	0.35
92_M	188_D	0.630	0.35
13_K	45_T	0.627	0.35
25_Q	242_T	0.627	0.35
87_F	152_K	0.627	0.35
151_Q	171_L	0.626	0.34
293_F	298_T	0.623	0.34
83_D	155_E	0.623	0.34
176_I	180_K	0.623	0.34
12_S	36_V	0.621	0.34
122_I	126_Y	0.620	0.34
64_K	198_R	0.619	0.34
172_D	175_F	0.618	0.34
32_F	103_I	0.618	0.34
3_A	114_V	0.614	0.34
30_E	56_F	0.611	0.33
54_A	236_L	0.610	0.33
73_R	152_K	0.609	0.33
50_E	61_T	0.609	0.33
27_E	32_F	0.608	0.33
10_Y	91_D	0.606	0.33
51_S	55_D	0.606	0.33
46_L	61_T	0.605	0.33
81_R	159_I	0.605	0.33
282_S	300_R	0.605	0.33
9_A	72_G	0.605	0.33
19_S	22_S	0.601	0.33
48_M	321_F	0.601	0.33
88_H	99_V	0.597	0.32
26_Q	206_S	0.596	0.32
4_S	156_E	0.595	0.32
40_G	66_N	0.595	0.32
72_G	87_F	0.594	0.32
95_A	98_L	0.593	0.32
88_H	177_D	0.592	0.32
49_L	59_I	0.591	0.32
158_D	184_D	0.589	0.32
40_G	74_N	0.588	0.32
308_L	319_N	0.587	0.31
218_F	253_H	0.587	0.31
53_Q	63_I	0.586	0.31
70_A	87_F	0.585	0.31
167_K	177_D	0.585	0.31
111_N	195_M	0.584	0.31
53_Q	57_P	0.580	0.31
60_F	64_K	0.578	0.31
70_A	191_K	0.577	0.31
3_A	58_L	0.577	0.31
314_Y	321_F	0.576	0.31
55_D	293_F	0.573	0.30
8_P	72_G	0.571	0.30
41_S	46_L	0.571	0.30
111_N	115_C	0.570	0.30
314_Y	319_N	0.570	0.30
74_N	91_D	0.569	0.30
99_V	187_G	0.568	0.30
135_K	138_L	0.565	0.30
16_L	124_S	0.565	0.30
12_S	150_K	0.564	0.30
98_L	161_N	0.562	0.30
16_L	48_M	0.562	0.30
243_F	246_R	0.562	0.30
11_N	43_D	0.562	0.30
34_V	121_R	0.561	0.30
11_N	38_D	0.561	0.30
89_D	152_K	0.559	0.29
13_K	230_Y	0.559	0.29
80_A	85_L	0.558	0.29
142_T	145_M	0.558	0.29
69_I	90_S	0.557	0.29
320_L	325_L	0.557	0.29
148_K	198_R	0.555	0.29
312_Q	316_M	0.555	0.29
28_C	106_H	0.555	0.29
281_R	287_L	0.553	0.29
75_Q	78_R	0.553	0.29
231_D	286_H	0.553	0.29
309_L	314_Y	0.552	0.29
70_A	169_F	0.552	0.29
159_I	172_D	0.550	0.29
139_A	236_L	0.548	0.29
154_L	177_D	0.547	0.28
35_I	59_I	0.546	0.28
12_S	88_H	0.546	0.28
33_E	60_F	0.545	0.28
103_I	107_E	0.545	0.28
19_S	84_I	0.545	0.28
10_Y	43_D	0.545	0.28
201_I	205_S	0.545	0.28
318_L	323_E	0.544	0.28
20_L	100_A	0.541	0.28
9_A	89_D	0.541	0.28
94_A	173_T	0.539	0.28
84_I	103_I	0.538	0.28
63_I	75_Q	0.536	0.28
9_A	73_R	0.536	0.28
24_N	59_I	0.535	0.28
13_K	43_D	0.534	0.28
177_D	180_K	0.532	0.27
281_R	284_D	0.530	0.27
23_L	76_A	0.530	0.27
272_Y	279_N	0.530	0.27
87_F	205_S	0.530	0.27
41_S	49_L	0.530	0.27
74_N	177_D	0.528	0.27
257_P	303_A	0.528	0.27
140_K	302_M	0.526	0.27
182_I	206_S	0.525	0.27
4_S	81_R	0.525	0.27
108_N	284_D	0.525	0.27
52_F	309_L	0.524	0.27
281_R	293_F	0.523	0.27
167_K	172_D	0.523	0.27
34_V	141_L	0.522	0.27
312_Q	315_D	0.522	0.27
106_H	194_H	0.522	0.27
28_C	93_L	0.521	0.27
318_L	327_V	0.519	0.27
26_Q	174_D	0.518	0.26
58_L	72_G	0.516	0.26
13_K	54_A	0.515	0.26
147_K	153_L	0.514	0.26
99_V	151_Q	0.514	0.26
16_L	90_S	0.514	0.26
20_L	204_N	0.514	0.26
124_S	204_N	0.513	0.26
41_S	45_T	0.512	0.26
177_D	188_D	0.512	0.26
35_I	80_A	0.512	0.26
155_E	170_D	0.511	0.26
124_S	306_Q	0.510	0.26
28_C	98_L	0.510	0.26
30_E	219_D	0.509	0.26
15_R	45_T	0.509	0.26
312_Q	318_L	0.509	0.26
102_H	179_L	0.506	0.26
32_F	81_R	0.506	0.26
106_H	185_E	0.505	0.26
289_F	305_I	0.504	0.26
279_N	300_R	0.504	0.26
10_Y	68_G	0.504	0.26
104_K	111_N	0.504	0.26
85_L	154_L	0.503	0.25
285_V	301_I	0.503	0.25
15_R	174_D	0.503	0.25
177_D	317_L	0.503	0.25
167_K	171_L	0.502	0.25
7_I	167_K	0.501	0.25
311_S	321_F	0.501	0.25
271_A	277_Y	0.500	0.25
23_L	27_E	0.500	0.25
210_K	213_V	0.500	0.25

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3bcvA	2	0.4464	100	0.513	Contact Map
3l7iA	4	0.1658	100	0.539	Contact Map
1qg8A	1	0.5561	100	0.553	Contact Map
2d7iA	1	0.8469	100	0.556	Contact Map
1xhbA	1	0.8827	100	0.559	Contact Map
2z86A	2	0.6301	100	0.565	Contact Map
5ajoA	1	0.8929	100	0.576	Contact Map
4fixA	3	0.8903	100	0.635	Contact Map
3ckjA	2	0.6403	100	0.646	Contact Map
2nxvA	4	0.5816	100	0.646	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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