GREMLIN Database
YFMR - Uncharacterized ABC transporter ATP-binding protein YfmR
UniProt: O06476 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 629 (503)
Sequences: 457 (261)
Seq/√Len: 11.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
8_N21_H5.1061.00
219_N241_E4.0180.99
48_V60_I3.7780.99
436_T440_K3.7470.99
85_E88_Y3.2430.97
105_L108_L3.2330.97
398_K401_D3.1950.97
83_V86_H3.1460.96
31_R221_V3.0680.96
285_A288_D3.0650.96
84_L87_I2.9800.95
78_P89_S2.9200.94
46_L211_V2.9180.94
102_E105_L2.9120.94
311_S487_P2.8550.94
101_Y105_L2.7560.92
248_A252_A2.7490.92
6_A24_F2.7040.92
400_I434_Q2.6700.91
279_R286_R2.5900.90
322_E374_D2.5880.90
78_P85_E2.5350.89
88_Y91_E2.4690.87
276_A279_R2.4630.87
80_G85_E2.4470.87
125_Q129_D2.4280.87
111_D114_N2.4090.86
78_P83_V2.3780.85
275_G279_R2.3620.85
81_Q85_E2.3580.85
90_G105_L2.3340.84
263_N266_R2.3260.84
79_A87_I2.3120.84
83_V87_I2.2850.83
78_P87_I2.2370.81
79_A86_H2.2280.81
82_T85_E2.2110.81
149_V159_L2.2020.80
344_G347_I2.1720.79
101_Y108_L2.1640.79
269_L273_R2.1350.78
445_E460_N2.1130.77
187_N214_D2.0790.76
321_A339_E2.0540.75
198_E220_R2.0490.75
78_P84_L2.0150.74
101_Y104_A2.0090.74
273_R287_I1.9660.72
288_D292_T1.9520.71
79_A85_E1.9480.71
277_K283_Q1.9430.71
7_E11_K1.9370.71
80_G157_N1.9330.71
188_H427_F1.9170.70
258_E262_Q1.9120.70
433_M436_T1.8790.68
215_R479_L1.8680.68
79_A83_V1.8580.68
365_A505_D1.8410.67
11_K48_V1.8380.67
91_E94_V1.8350.67
255_E333_L1.8220.66
82_T87_I1.8220.66
321_A324_V1.8120.65
218_L227_E1.8100.65
403_I434_Q1.8080.65
86_H89_S1.8070.65
278_A283_Q1.8020.65
323_N336_R1.7610.63
271_W470_D1.7350.62
85_E89_S1.7170.61
79_A84_L1.6750.59
272_L287_I1.6580.58
78_P86_H1.6500.58
20_D60_I1.6460.58
24_F226_Y1.6450.58
80_G89_S1.6410.58
348_G370_P1.6340.57
187_N469_N1.6260.57
285_A294_K1.6130.56
90_G109_G1.6090.56
363_A370_P1.5960.55
268_E271_W1.5950.55
326_I329_D1.5900.55
90_G96_K1.5890.55
16_K43_S1.5740.54
397_L405_E1.5680.54
217_F350_I1.5670.54
239_N242_V1.5620.54
100_E120_H1.5520.53
202_S220_R1.5510.53
212_T239_N1.5500.53
160_S354_G1.5450.53
124_A483_I1.5420.53
358_T449_L1.5380.52
341_V347_I1.5380.52
199_G202_S1.5270.52
80_G83_V1.5090.51
144_L479_L1.4950.50
255_E336_R1.4890.50
180_L494_S1.4850.50
80_G87_I1.4770.49
311_S486_F1.4750.49
24_F87_I1.4730.49
205_P386_Y1.4700.49
443_G488_G1.4690.49
36_G41_G1.4680.49
96_K100_E1.4660.49
269_L287_I1.4610.49
392_E450_Y1.4550.48
215_R286_R1.4500.48
231_G245_E1.4450.48
46_L426_R1.4380.48
79_A89_S1.4330.47
146_K149_V1.4260.47
21_H80_G1.4140.46
173_L448_R1.4100.46
78_P81_Q1.4060.46
228_L233_L1.4040.46
356_G466_E1.4020.46
91_E105_L1.4020.46
281_T285_A1.3980.46
46_L56_E1.3970.46
315_G378_G1.3920.45
26_I32_I1.3800.45
100_E105_L1.3780.45
268_E278_A1.3750.44
319_I461_V1.3730.44
239_N252_A1.3670.44
126_A131_N1.3670.44
38_N353_N1.3640.44
268_E470_D1.3570.44
275_G280_S1.3480.43
20_D52_L1.3440.43
103_K107_E1.3430.43
263_N341_V1.3390.43
90_G93_A1.3370.43
220_R483_I1.3330.42
282_K470_D1.3310.42
126_A130_A1.3300.42
80_G84_L1.3300.42
400_I403_I1.3280.42
106_Y109_G1.3280.42
68_V80_G1.3270.42
448_R471_L1.3140.41
322_E376_T1.3120.41
87_I177_A1.3070.41
149_V292_T1.3010.41
123_A127_K1.2980.41
275_G278_A1.2970.41
277_K282_K1.2970.41
148_G166_R1.2970.41
91_E101_Y1.2950.41
427_F452_L1.2920.40
268_E283_Q1.2900.40
204_Y208_V1.2860.40
97_T127_K1.2830.40
81_Q87_I1.2830.40
78_P88_Y1.2770.40
90_G100_E1.2740.40
92_S101_Y1.2600.39
98_L104_A1.2520.39
178_D372_G1.2510.38
93_A108_L1.2440.38
324_V392_E1.2370.38
276_A280_S1.2360.38
245_E249_E1.2330.38
43_S47_K1.2300.38
89_S92_S1.2250.37
281_T287_I1.2230.37
210_L222_T1.2120.37
326_I371_D1.2090.37
233_L270_A1.2090.37
50_A62_K1.2080.36
100_E104_A1.2070.36
91_E95_M1.2030.36
335_D372_G1.2000.36
92_S95_M1.1990.36
276_A283_Q1.1990.36
147_L196_W1.1950.36
6_A494_S1.1940.36
429_F445_E1.1930.36
424_L427_F1.1930.36
55_I60_I1.1930.36
324_V380_T1.1900.36
188_H469_N1.1880.36
278_A282_K1.1860.35
47_K52_L1.1800.35
194_I460_N1.1780.35
13_Y56_E1.1680.35
272_L290_V1.1610.34
287_I294_K1.1590.34
247_R496_D1.1570.34
452_L507_L1.1550.34
160_S356_G1.1530.34
160_S466_E1.1530.34
162_G466_E1.1530.34
162_G356_G1.1530.34
96_K105_L1.1450.34
400_I405_E1.1450.34
214_D469_N1.1420.34
363_A375_I1.1340.33
170_A326_I1.1300.33
163_Q212_T1.1280.33
44_T201_L1.1270.33
464_L468_T1.1270.33
81_Q86_H1.1220.33
160_S495_H1.1210.33
122_L129_D1.1210.33
79_A88_Y1.1200.33
95_M105_L1.1110.32
197_L443_G1.1090.32
397_L401_D1.1060.32
314_L507_L1.1020.32
202_S487_P1.1010.32
171_K247_R1.0960.32
190_D351_G1.0950.31
462_L488_G1.0930.31
188_H452_L1.0880.31
160_S183_D1.0870.31
19_F180_L1.0860.31
30_E224_R1.0840.31
213_H353_N1.0790.31
219_N363_A1.0770.31
213_H444_G1.0750.31
315_G460_N1.0750.31
265_L507_L1.0730.31
163_Q461_V1.0730.31
26_I439_R1.0720.31
394_N500_L1.0710.30
36_G39_G1.0680.30
320_E375_I1.0650.30
10_Y57_E1.0620.30
282_K285_A1.0620.30
190_D495_H1.0610.30
268_E279_R1.0570.30
354_G466_E1.0560.30
122_L126_A1.0540.30
419_T422_Q1.0520.30
334_V459_P1.0500.30
18_L443_G1.0490.30
179_L318_V1.0460.29
416_D419_T1.0440.29
427_F469_N1.0430.29
210_L225_I1.0410.29
183_D190_D1.0380.29
4_L116_Q1.0370.29
90_G108_L1.0320.29
197_L448_R1.0310.29
146_K159_L1.0310.29
388_Q466_E1.0290.29
356_G388_Q1.0290.29
118_Q126_A1.0270.29
83_V88_Y1.0220.28
166_R471_L1.0200.28
362_N397_L1.0160.28
354_G495_H1.0150.28
9_L45_L1.0150.28
120_H124_A1.0130.28
489_V499_F1.0130.28
149_V165_K1.0130.28
328_Y333_L1.0120.28
169_I469_N1.0100.28
155_P363_A1.0100.28
382_R422_Q1.0080.28
186_T373_G1.0070.28
384_G505_D0.9980.28
385_Y424_L0.9970.27
49_I99_R0.9950.27
40_T370_P0.9940.27
396_E401_D0.9920.27
357_K465_D0.9920.27
183_D354_G0.9900.27
90_G101_Y0.9890.27
159_L165_K0.9820.27
80_G395_G0.9790.27
22_I115_E0.9730.27
173_L196_W0.9730.27
365_A463_F0.9730.27
213_H488_G0.9720.26
188_H424_L0.9680.26
242_V375_I0.9650.26
378_G460_N0.9640.26
91_E102_E0.9640.26
364_L471_L0.9620.26
323_N439_R0.9580.26
30_E48_V0.9570.26
220_R249_E0.9530.26
46_L458_E0.9530.26
211_V461_V0.9530.26
124_A127_K0.9490.26
271_W279_R0.9480.26
390_H470_D0.9470.26
4_L103_K0.9460.26
184_E353_N0.9350.25
180_L218_L0.9330.25
93_A101_Y0.9280.25
280_S285_A0.9270.25
19_F22_I0.9250.25
32_I491_I0.9230.25
39_G42_K0.9210.25
247_R329_D0.9170.24
91_E100_E0.9120.24
84_L88_Y0.9080.24
84_L89_S0.9080.24
399_V406_T0.9050.24
187_N213_H0.9040.24
9_L112_P0.9010.24
97_T363_A0.9000.24
23_S60_I0.9000.24
277_K284_K0.8990.24
202_S491_I0.8990.24
326_I363_A0.8940.24
208_V221_V0.8930.24
161_G468_T0.8870.23
396_E483_I0.8870.23
283_Q294_K0.8860.23
284_K288_D0.8850.23
186_T469_N0.8850.23
73_Q488_G0.8810.23
258_E261_R0.8810.23
47_K54_S0.8730.23
8_N82_T0.8720.23
96_K103_K0.8670.23
266_R434_Q0.8670.23
268_E277_K0.8660.23
248_A366_G0.8660.23
99_R102_E0.8640.23
4_L267_R0.8640.23
388_Q472_D0.8620.22
69_E172_N0.8620.22
259_T263_N0.8610.22
279_R282_K0.8610.22
68_V96_K0.8560.22
408_E421_E0.8540.22
6_A31_R0.8530.22
167_V270_A0.8530.22
426_R478_V0.8490.22
160_S190_D0.8490.22
161_G472_D0.8460.22
88_Y104_A0.8460.22
8_N52_L0.8450.22
38_N42_K0.8440.22
314_L318_V0.8410.22
226_Y403_I0.8390.22
280_S290_V0.8390.22
35_I355_I0.8380.22
38_N73_Q0.8370.22
275_G283_Q0.8360.22
38_N444_G0.8360.22
192_E240_Y0.8350.22
7_E13_Y0.8350.22
276_A285_A0.8340.22
378_G381_V0.8340.22
249_E252_A0.8340.22
185_P467_P0.8330.21
26_I89_S0.8320.21
98_L101_Y0.8320.21
238_G242_V0.8310.21
319_I331_R0.8290.21
41_G351_G0.8290.21
201_L208_V0.8270.21
21_H59_E0.8230.21
273_R284_K0.8220.21
329_D332_M0.8220.21
144_L177_A0.8210.21
218_L269_L0.8200.21
165_K470_D0.8190.21
399_V402_Y0.8180.21
183_D472_D0.8160.21
97_T124_A0.8110.21
394_N397_L0.8100.21
92_S105_L0.8090.21
346_R494_S0.8080.21
196_W448_R0.8080.21
162_G354_G0.8060.21
193_T243_F0.8060.21
448_R462_L0.8050.21
318_V449_L0.8020.20
339_E508_I0.8010.20
42_K184_E0.7980.20
195_E224_R0.7950.20
212_T238_G0.7950.20
367_R376_T0.7950.20
357_K466_E0.7930.20
356_G465_D0.7930.20
6_A22_I0.7920.20
100_E127_K0.7860.20
231_G483_I0.7860.20
21_H483_I0.7850.20
24_F45_L0.7810.20
160_S388_Q0.7800.20
162_G388_Q0.7800.20
166_R170_A0.7790.20
105_L109_G0.7790.20
345_E505_D0.7780.20
494_S501_D0.7770.20
146_K470_D0.7750.20
161_G354_G0.7750.20
213_H442_S0.7750.20
323_N394_N0.7750.20
36_G42_K0.7740.20
7_E103_K0.7720.20
187_N448_R0.7720.20
358_T510_F0.7710.20
163_Q261_R0.7700.19
42_K442_S0.7690.19
11_K181_I0.7690.19
80_G96_K0.7690.19
196_W488_G0.7680.19
35_I48_V0.7670.19
18_L147_L0.7640.19
54_S99_R0.7640.19
226_Y481_D0.7630.19
448_R488_G0.7620.19
92_S108_L0.7620.19
4_L48_V0.7620.19
375_I504_V0.7610.19
429_F451_L0.7580.19
120_H205_P0.7580.19
212_T425_E0.7580.19
224_R376_T0.7570.19
321_A364_L0.7560.19
265_L271_W0.7550.19
42_K444_G0.7540.19
326_I368_H0.7530.19
95_M108_L0.7530.19
102_E108_L0.7520.19
184_E442_S0.7510.19
281_T288_D0.7510.19
386_Y391_S0.7500.19
190_D354_G0.7500.19
250_R365_A0.7490.19
166_R196_W0.7470.19
488_G496_D0.7470.19
33_G218_L0.7470.19
131_N508_I0.7470.19
115_E119_K0.7450.19
351_G357_K0.7440.19
351_G465_D0.7440.19
185_P353_N0.7410.19
276_A282_K0.7400.19
31_R231_G0.7380.18
82_T88_Y0.7360.18
447_R455_L0.7360.18
13_Y241_E0.7360.18
122_L333_L0.7360.18
183_D465_D0.7290.18
183_D357_K0.7290.18
216_Y226_Y0.7290.18
23_S202_S0.7290.18
88_Y93_A0.7260.18
52_L57_E0.7250.18
318_V460_N0.7240.18
106_Y130_A0.7230.18
184_E444_G0.7220.18
213_H496_D0.7220.18
90_G106_Y0.7210.18
477_S492_T0.7210.18
262_Q345_E0.7200.18
136_A140_A0.7190.18
265_L292_T0.7190.18
39_G44_T0.7190.18
355_I510_F0.7180.18
88_Y105_L0.7160.18
83_V494_S0.7140.18
233_L490_V0.7140.18
82_T89_S0.7130.18
146_K349_I0.7120.18
353_N488_G0.7110.18
139_L256_Q0.7110.18
167_V383_I0.7110.18
263_N295_E0.7100.18
433_M440_K0.7100.18
49_I72_H0.7080.18
167_V426_R0.7060.18
188_H385_Y0.7050.18
72_H172_N0.7050.18
118_Q204_Y0.7040.18
253_Q438_I0.7030.17
92_S102_E0.7030.17
275_G480_E0.7020.17
400_I404_K0.6970.17
80_G153_T0.6970.17
427_F494_S0.6960.17
353_N444_G0.6960.17
95_M102_E0.6950.17
173_L197_L0.6920.17
104_A108_L0.6920.17
282_K288_D0.6900.17
133_A459_P0.6880.17
276_A288_D0.6870.17
212_T362_N0.6870.17
397_L404_K0.6860.17
68_V209_M0.6860.17
61_T396_E0.6850.17
401_D404_K0.6840.17
397_L400_I0.6830.17
323_N372_G0.6810.17
354_G388_Q0.6810.17
164_K389_D0.6810.17
4_L54_S0.6780.17
282_K290_V0.6780.17
343_P461_V0.6770.17
163_Q386_Y0.6760.17
93_A96_K0.6760.17
163_Q349_I0.6740.17
196_W315_G0.6730.17
373_G388_Q0.6730.17
28_E479_L0.6720.17
346_R420_A0.6710.17
28_E137_N0.6710.17
271_W278_A0.6710.17
17_T21_H0.6700.17
38_N184_E0.6690.17
112_P116_Q0.6690.17
263_N505_D0.6680.17
13_Y48_V0.6680.17
180_L187_N0.6680.17
157_N368_H0.6680.17
22_I180_L0.6640.16
103_K108_L0.6640.16
366_G369_T0.6640.16
265_L350_I0.6630.16
479_L483_I0.6610.16
31_R420_A0.6610.16
92_S98_L0.6600.16
73_Q213_H0.6600.16
93_A98_L0.6590.16
95_M101_Y0.6560.16
117_R490_V0.6560.16
271_W282_K0.6550.16
119_K122_L0.6550.16
418_I508_I0.6550.16
356_G495_H0.6550.16
466_E495_H0.6550.16
5_K494_S0.6540.16
23_S505_D0.6530.16
348_G500_L0.6530.16
284_K287_I0.6510.16
326_I392_E0.6500.16
94_V101_Y0.6490.16
353_N496_D0.6480.16
48_V360_L0.6480.16
7_E17_T0.6430.16
204_Y420_A0.6430.16
182_L353_N0.6420.16
421_E431_R0.6420.16
271_W348_G0.6420.16
481_D485_Q0.6410.16
164_K333_L0.6410.16
483_I490_V0.6390.16
43_S121_L0.6370.16
186_T427_F0.6370.16
428_L440_K0.6360.16
265_L272_L0.6360.16
38_N187_N0.6360.16
239_N399_V0.6350.16
326_I450_Y0.6350.16
49_I132_N0.6350.16
256_Q449_L0.6330.16
275_G293_L0.6330.16
26_I57_E0.6310.16
9_L56_E0.6310.16
239_N257_K0.6310.16
209_M481_D0.6300.15
6_A19_F0.6290.15
271_W277_K0.6290.15
31_R52_L0.6280.15
131_N200_Y0.6270.15
160_S472_D0.6270.15
93_A99_R0.6270.15
318_V461_V0.6260.15
480_E499_F0.6260.15
315_G445_E0.6260.15
191_N224_R0.6250.15
227_E477_S0.6230.15
10_Y115_E0.6230.15
443_G496_D0.6230.15
151_D154_K0.6210.15
169_I214_D0.6200.15
202_S235_T0.6200.15
100_E333_L0.6200.15
232_S336_R0.6190.15
249_E316_K0.6180.15
279_R285_A0.6170.15
22_I97_T0.6160.15
277_K280_S0.6160.15
391_S483_I0.6150.15
6_A508_I0.6150.15
19_F46_L0.6140.15
188_H428_L0.6140.15
17_T65_S0.6130.15
104_A505_D0.6130.15
176_P363_A0.6120.15
104_A116_Q0.6110.15
279_R480_E0.6100.15
126_A508_I0.6100.15
490_V508_I0.6100.15
429_F475_T0.6090.15
268_E476_L0.6080.15
13_Y221_V0.6070.15
351_G495_H0.6060.15
279_R292_T0.6050.15
20_D81_Q0.6040.15
81_Q89_S0.6030.15
208_V386_Y0.6020.15
73_Q443_G0.6010.15
52_L55_I0.6010.15
132_N247_R0.6000.15
268_E276_A0.6000.15
112_P150_N0.5970.15
38_N213_H0.5960.15
5_K8_N0.5950.15
113_E122_L0.5940.15
189_L468_T0.5930.15
164_K243_F0.5930.15
257_K325_M0.5920.15
401_D406_T0.5920.15
122_L131_N0.5910.15
349_I461_V0.5910.15
265_L290_V0.5870.14
282_K459_P0.5870.14
263_N483_I0.5850.14
203_Q341_V0.5850.14
159_L163_Q0.5820.14
219_N333_L0.5810.14
446_K489_V0.5810.14
236_Y250_R0.5810.14
190_D472_D0.5810.14
73_Q448_R0.5800.14
203_Q322_E0.5770.14
218_L242_V0.5770.14
183_D495_H0.5770.14
89_S105_L0.5760.14
81_Q84_L0.5750.14
378_G496_D0.5750.14
396_E439_R0.5740.14
185_P442_S0.5740.14
7_E21_H0.5740.14
144_L178_D0.5710.14
364_L463_F0.5700.14
54_S126_A0.5690.14
165_K279_R0.5690.14
91_E98_L0.5690.14
73_Q197_L0.5680.14
205_P208_V0.5660.14
9_L61_T0.5660.14
4_L81_Q0.5650.14
468_T471_L0.5650.14
217_F499_F0.5630.14
83_V155_P0.5630.14
45_L97_T0.5620.14
280_S387_T0.5620.14
113_E116_Q0.5610.14
268_E475_T0.5590.14
101_Y134_W0.5570.14
20_D232_S0.5570.14
348_G504_V0.5560.14
5_K27_E0.5550.14
258_E297_T0.5550.14
283_Q447_R0.5550.14
41_G190_D0.5540.14
98_L105_L0.5540.14
383_I416_D0.5540.14
205_P306_D0.5540.14
344_G364_L0.5530.14
331_R383_I0.5520.14
187_N488_G0.5520.14
91_E104_A0.5500.14
427_F451_L0.5480.13
315_G427_F0.5480.13
88_Y101_Y0.5470.13
420_A434_Q0.5460.13
162_G357_K0.5450.13
162_G465_D0.5450.13
182_L185_P0.5450.13
166_R468_T0.5450.13
160_S359_T0.5450.13
199_G323_N0.5440.13
384_G507_L0.5440.13
351_G356_G0.5440.13
351_G466_E0.5440.13
160_S465_D0.5430.13
160_S357_K0.5430.13
59_E62_K0.5420.13
226_Y477_S0.5410.13
156_V167_V0.5410.13
493_V510_F0.5410.13
196_W443_G0.5400.13
233_L501_D0.5390.13
270_A509_V0.5370.13
4_L115_E0.5370.13
194_I315_G0.5370.13
429_F455_L0.5360.13
165_K282_K0.5350.13
82_T86_H0.5340.13
93_A105_L0.5330.13
443_G479_L0.5320.13
202_S398_K0.5320.13
176_P323_N0.5310.13
279_R470_D0.5310.13
159_L470_D0.5310.13
204_Y456_M0.5310.13
135_D333_L0.5290.13
182_L444_G0.5290.13
418_I422_Q0.5290.13
183_D356_G0.5290.13
183_D466_E0.5290.13
95_M99_R0.5270.13
354_G472_D0.5260.13
383_I486_F0.5260.13
395_G409_V0.5240.13
185_P197_L0.5240.13
149_V470_D0.5230.13
256_Q259_T0.5230.13
92_S104_A0.5220.13
425_E431_R0.5210.13
280_S283_Q0.5200.13
36_G44_T0.5200.13
209_M375_I0.5200.13
304_S335_D0.5190.13
285_A290_V0.5190.13
99_R105_L0.5180.13
410_V440_K0.5180.13
194_I360_L0.5170.13
270_A322_E0.5150.13
186_T467_P0.5130.13
237_K243_F0.5120.13
387_T423_M0.5110.13
281_T316_K0.5110.13
184_E443_G0.5100.13
128_M281_T0.5100.13
134_W233_L0.5090.13
4_L86_H0.5090.13
5_K19_F0.5080.13
188_H213_H0.5070.13
208_V219_N0.5070.13
80_G86_H0.5060.13
343_P507_L0.5050.13
219_N504_V0.5050.13
226_Y255_E0.5040.13
190_D357_K0.5030.12
190_D465_D0.5030.12
59_E107_E0.5030.12
187_N471_L0.5030.12
399_V405_E0.5020.12
350_I387_T0.5010.12
200_Y404_K0.5010.12
314_L343_P0.5010.12
245_E270_A0.5010.12
191_N346_R0.5000.12
324_V338_N0.5000.12
217_F470_D0.5000.12
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4finA 2 0.8506 100 0.397 Contact Map
2iw3A 2 0.6979 100 0.484 Contact Map
4q9hA 1 0.7854 100 0.511 Contact Map
4f4cA 1 0.7409 100 0.517 Contact Map
3bk7A 1 0.8029 100 0.521 Contact Map
1yqtA 1 0.7949 100 0.526 Contact Map
3ozxA 1 0.8029 100 0.532 Contact Map
3j16B 1 0.8172 100 0.541 Contact Map
3ux8A 2 0.6725 100 0.573 Contact Map
2vf7A 2 0.7329 100 0.649 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0148 seconds.