YRAO - BACSU - GREMLIN Contacts

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YRAO - Uncharacterized transporter YraO

UniProt:	O05407	Sequences: MLTILGFSMVTVFTILIMTKKVSPIVALTITPIVFALIGGFGKGIGDMILEGIQTVASSAALLLFAILFFGILIDAGLFDPLIEKILSIVKGDPVKIAIGSAVLAMLIALDGDGTTTYMITVSAMLPLYKRIGMNPMVMATLAMLSLSIVSGMTPWGGPATRAISVLGLDPSDFFVPLLPTMLGGIACVIFLAFLMGRKERNRIGIVQLEPRHITKDSSQSYMAATLESEQLKRPRLIYLNLFLVISIMVFIVLGTKHPSVLFLIGFVLALTINYPNVKMQKERIAEHSGNAITVVLLVFSAGVFAGILSGTKMVDAIAGSLISIIPSSMGGFFPVIVALTSIPFTFVLSNDAYYFGMVPIFAEAASAYGIEPVEIARASIMGQPVHLMSPLVASTVLLVSMLKMDLGSFQRFAVKWAVITSLVITLLAIITGAITIL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	438 (429)
Sequences:	665 (415)
Seq/√Len:	20.0

BACSU - YRAO CITM CITN

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
240_L	273_I	11.875	1.00
284_R	287_E	5.516	1.00
69_F	245_V	4.577	1.00
5_L	39_G	4.045	1.00
248_I	266_G	3.886	1.00
269_L	273_I	3.729	1.00
234_R	237_L	3.679	1.00
102_A	142_L	3.632	1.00
49_I	304_V	3.385	1.00
184_G	428_L	3.310	1.00
277_N	280_M	3.296	1.00
69_F	248_I	3.168	1.00
36_A	45_I	3.105	0.99
98_A	142_L	3.068	0.99
341_T	354_Y	3.048	0.99
7_F	318_I	2.947	0.99
102_A	189_V	2.901	0.99
73_L	245_V	2.846	0.99
15_I	19_T	2.748	0.99
31_T	34_V	2.685	0.98
234_R	275_Y	2.645	0.98
6_G	318_I	2.642	0.98
183_L	187_A	2.628	0.98
248_I	262_L	2.573	0.98
85_K	88_S	2.566	0.98
130_K	136_P	2.551	0.98
410_F	414_A	2.489	0.97
41_F	48_M	2.474	0.97
51_E	311_G	2.393	0.97
351_N	387_H	2.340	0.96
60_A	300_F	2.338	0.96
49_I	261_V	2.287	0.95
103_V	190_I	2.261	0.95
97_I	132_I	2.256	0.95
86_I	100_G	2.239	0.95
101_S	129_Y	2.227	0.95
72_I	267_F	2.221	0.95
188_C	421_T	2.179	0.94
82_L	242_L	2.148	0.94
78_L	242_L	2.114	0.93
232_L	235_P	2.090	0.93
73_L	78_L	2.089	0.93
423_L	427_L	2.070	0.92
141_T	414_A	2.061	0.92
99_I	194_F	2.013	0.91
29_T	264_L	1.994	0.91
393_V	396_T	1.992	0.91
64_L	296_V	1.989	0.91
3_T	321_S	1.953	0.90
200_E	203_R	1.918	0.89
16_L	31_T	1.904	0.89
98_A	134_M	1.889	0.88
145_L	418_A	1.881	0.88
76_A	275_Y	1.857	0.87
350_S	353_A	1.822	0.86
33_I	265_I	1.813	0.86
118_Y	395_S	1.790	0.85
46_G	258_H	1.782	0.85
5_L	35_F	1.768	0.85
99_I	190_I	1.722	0.83
9_M	35_F	1.719	0.83
63_L	295_V	1.717	0.83
104_L	125_M	1.708	0.82
66_A	114_G	1.699	0.82
346_T	387_H	1.686	0.82
313_K	316_D	1.669	0.81
64_L	292_A	1.653	0.80
234_R	284_R	1.652	0.80
20_K	409_S	1.651	0.80
162_R	352_D	1.650	0.80
75_D	288_H	1.646	0.80
298_L	394_A	1.631	0.79
3_T	6_G	1.607	0.78
170_D	255_G	1.602	0.78
135_N	138_V	1.592	0.78
152_G	160_A	1.580	0.77
53_I	82_L	1.563	0.76
250_V	254_L	1.557	0.76
95_V	201_R	1.548	0.75
428_L	432_T	1.542	0.75
163_A	377_A	1.541	0.75
232_L	275_Y	1.534	0.75
21_K	325_I	1.522	0.74
69_F	240_L	1.513	0.74
164_I	171_P	1.509	0.74
140_A	403_L	1.500	0.73
3_T	318_I	1.493	0.73
106_M	186_I	1.489	0.73
382_M	426_T	1.482	0.72
9_M	361_I	1.482	0.72
2_L	317_A	1.481	0.72
346_T	385_P	1.473	0.72
417_W	420_I	1.444	0.70
349_L	387_H	1.443	0.70
405_M	410_F	1.428	0.69
75_D	287_E	1.402	0.68
346_T	393_V	1.400	0.68
235_P	284_R	1.398	0.68
178_L	382_M	1.396	0.67
51_E	54_Q	1.376	0.66
359_V	376_I	1.370	0.66
382_M	429_A	1.366	0.66
409_S	412_R	1.365	0.66
105_A	121_T	1.361	0.65
318_I	349_L	1.358	0.65
26_V	271_L	1.357	0.65
181_T	432_T	1.341	0.64
240_L	269_L	1.333	0.64
62_L	248_I	1.330	0.64
184_G	326_I	1.324	0.63
34_V	250_V	1.323	0.63
75_D	284_R	1.308	0.62
346_T	351_N	1.305	0.62
394_A	432_T	1.291	0.61
243_F	431_I	1.287	0.61
149_I	189_V	1.287	0.61
4_I	8_S	1.286	0.61
237_L	240_L	1.277	0.60
90_V	100_G	1.276	0.60
47_D	51_E	1.276	0.60
14_T	351_N	1.272	0.60
331_G	369_Y	1.269	0.60
359_V	380_S	1.266	0.60
403_L	410_F	1.264	0.60
9_M	347_F	1.264	0.60
321_S	377_A	1.261	0.59
407_L	410_F	1.257	0.59
5_L	289_S	1.255	0.59
388_L	393_V	1.244	0.58
88_S	107_L	1.244	0.58
138_V	413_F	1.236	0.58
73_L	270_A	1.227	0.57
118_Y	388_L	1.227	0.57
235_P	275_Y	1.223	0.57
152_G	159_P	1.222	0.57
87_L	191_F	1.218	0.57
351_N	388_L	1.216	0.57
62_L	152_G	1.215	0.56
37_L	42_G	1.206	0.56
380_S	399_L	1.192	0.55
354_Y	380_S	1.190	0.55
188_C	192_L	1.176	0.54
187_A	246_I	1.157	0.53
419_V	422_S	1.154	0.53
227_L	280_M	1.153	0.52
113_D	298_L	1.153	0.52
88_S	253_V	1.150	0.52
386_V	393_V	1.147	0.52
93_D	201_R	1.143	0.52
109_A	147_L	1.139	0.52
302_A	353_A	1.137	0.51
207_V	210_E	1.130	0.51
141_T	413_F	1.130	0.51
342_S	354_Y	1.127	0.51
335_P	436_T	1.104	0.49
129_Y	140_A	1.104	0.49
105_A	146_S	1.104	0.49
157_G	160_A	1.103	0.49
135_N	413_F	1.096	0.49
377_A	380_S	1.084	0.48
113_D	123_S	1.082	0.48
144_M	410_F	1.082	0.48
45_I	404_K	1.082	0.48
400_V	407_L	1.082	0.48
78_L	245_V	1.074	0.47
24_P	67_I	1.072	0.47
131_R	365_A	1.071	0.47
113_D	116_T	1.071	0.47
115_T	347_F	1.069	0.47
237_L	273_I	1.068	0.47
164_I	169_L	1.067	0.47
140_A	410_F	1.065	0.47
76_A	97_I	1.063	0.47
245_V	248_I	1.061	0.47
36_A	41_F	1.052	0.46
349_L	388_L	1.049	0.46
316_D	320_G	1.049	0.46
179_L	183_L	1.045	0.45
175_F	182_M	1.043	0.45
34_V	243_F	1.042	0.45
148_S	425_I	1.038	0.45
393_V	397_V	1.038	0.45
118_Y	147_L	1.037	0.45
63_L	298_L	1.037	0.45
351_N	386_V	1.037	0.45
170_D	333_F	1.036	0.45
339_A	426_T	1.034	0.45
178_L	356_F	1.032	0.45
246_I	427_L	1.030	0.45
389_M	416_K	1.030	0.45
135_N	199_K	1.025	0.44
14_T	387_H	1.025	0.44
349_L	385_P	1.023	0.44
71_G	105_A	1.022	0.44
128_L	249_M	1.022	0.44
165_S	330_M	1.014	0.43
237_L	429_A	1.008	0.43
119_M	123_S	1.008	0.43
108_I	113_D	1.008	0.43
400_V	405_M	1.007	0.43
5_L	49_I	1.000	0.43
244_L	270_A	0.991	0.42
178_L	381_I	0.988	0.42
174_F	377_A	0.987	0.42
141_T	410_F	0.984	0.42
243_F	247_S	0.977	0.41
159_P	200_E	0.974	0.41
60_A	136_P	0.972	0.41
4_I	187_A	0.971	0.41
388_L	395_S	0.971	0.41
188_C	420_I	0.970	0.41
82_L	349_L	0.970	0.41
22_V	27_A	0.968	0.41
115_T	160_A	0.961	0.40
413_F	416_K	0.958	0.40
139_M	286_A	0.957	0.40
115_T	299_V	0.956	0.40
130_K	133_G	0.956	0.40
163_A	359_V	0.951	0.40
191_F	195_L	0.945	0.39
380_S	385_P	0.945	0.39
346_T	386_V	0.938	0.39
11_T	15_I	0.937	0.39
150_V	404_K	0.935	0.39
69_F	78_L	0.935	0.39
346_T	384_Q	0.935	0.39
387_H	393_V	0.934	0.38
34_V	37_L	0.933	0.38
98_A	138_V	0.932	0.38
60_A	396_T	0.931	0.38
385_P	393_V	0.930	0.38
347_F	393_V	0.929	0.38
325_I	361_I	0.928	0.38
4_I	51_E	0.926	0.38
240_L	244_L	0.926	0.38
21_K	133_G	0.921	0.38
105_A	143_A	0.920	0.38
161_T	397_V	0.918	0.37
99_I	103_V	0.916	0.37
358_M	365_A	0.910	0.37
86_I	133_G	0.908	0.37
131_R	386_V	0.907	0.37
362_F	376_I	0.906	0.37
265_I	269_L	0.905	0.37
190_I	427_L	0.902	0.37
183_L	431_I	0.901	0.36
63_L	299_V	0.900	0.36
177_P	378_R	0.898	0.36
321_S	339_A	0.894	0.36
69_F	273_I	0.889	0.36
140_A	399_L	0.889	0.36
268_V	309_L	0.886	0.36
4_I	225_A	0.884	0.35
96_K	399_L	0.884	0.35
105_A	232_L	0.883	0.35
351_N	397_V	0.881	0.35
389_M	417_W	0.881	0.35
14_T	349_L	0.879	0.35
69_F	269_L	0.879	0.35
13_F	113_D	0.878	0.35
21_K	58_S	0.877	0.35
148_S	410_F	0.877	0.35
351_N	393_V	0.875	0.35
187_A	191_F	0.875	0.35
9_M	393_V	0.875	0.35
349_L	386_V	0.867	0.34
271_L	308_I	0.866	0.34
279_K	285_I	0.863	0.34
187_A	236_R	0.860	0.34
17_I	90_V	0.857	0.34
29_T	371_I	0.856	0.34
142_L	189_V	0.850	0.33
80_D	361_I	0.849	0.33
74_I	113_D	0.844	0.33
335_P	354_Y	0.843	0.33
384_Q	399_L	0.843	0.33
80_D	233_K	0.842	0.33
242_L	329_S	0.840	0.33
232_L	236_R	0.838	0.33
118_Y	387_H	0.835	0.33
99_I	325_I	0.835	0.33
198_R	202_N	0.835	0.33
343_I	419_V	0.834	0.33
181_T	434_A	0.831	0.32
331_G	366_A	0.830	0.32
309_L	403_L	0.825	0.32
105_A	125_M	0.824	0.32
60_A	165_S	0.821	0.32
195_L	199_K	0.821	0.32
347_F	351_N	0.820	0.32
408_G	412_R	0.818	0.32
247_S	251_F	0.816	0.32
187_A	279_K	0.815	0.31
275_Y	365_A	0.815	0.31
142_L	196_M	0.815	0.31
71_G	90_V	0.808	0.31
115_T	152_G	0.805	0.31
69_F	138_V	0.804	0.31
12_V	34_V	0.803	0.31
284_R	289_S	0.801	0.31
18_M	99_I	0.798	0.31
109_A	153_M	0.796	0.30
210_E	427_L	0.796	0.30
169_L	285_I	0.796	0.30
346_T	349_L	0.794	0.30
6_G	111_D	0.791	0.30
30_I	268_V	0.788	0.30
90_V	350_S	0.786	0.30
42_G	72_I	0.785	0.30
83_I	422_S	0.777	0.29
45_I	363_A	0.777	0.29
106_M	146_S	0.775	0.29
165_S	202_N	0.774	0.29
18_M	329_S	0.770	0.29
251_F	256_T	0.770	0.29
406_D	409_S	0.767	0.29
102_A	106_M	0.767	0.29
5_L	9_M	0.766	0.29
109_A	347_F	0.766	0.29
3_T	9_M	0.766	0.29
137_M	405_M	0.765	0.29
336_V	435_I	0.765	0.29
3_T	128_L	0.762	0.29
426_T	435_I	0.760	0.28
62_L	128_L	0.760	0.28
97_I	325_I	0.759	0.28
8_S	174_F	0.757	0.28
103_V	431_I	0.756	0.28
257_K	265_I	0.755	0.28
346_T	350_S	0.750	0.28
164_I	174_F	0.749	0.28
63_L	109_A	0.748	0.28
14_T	152_G	0.744	0.28
51_E	215_T	0.743	0.28
74_I	116_T	0.741	0.27
11_T	98_A	0.741	0.27
419_V	423_L	0.740	0.27
71_G	196_M	0.740	0.27
326_I	371_I	0.740	0.27
131_R	430_I	0.740	0.27
19_T	27_A	0.739	0.27
378_R	434_A	0.738	0.27
276_P	312_T	0.738	0.27
429_A	435_I	0.737	0.27
354_Y	359_V	0.737	0.27
8_S	35_F	0.736	0.27
288_H	361_I	0.733	0.27
143_A	147_L	0.733	0.27
280_M	304_V	0.733	0.27
118_Y	410_F	0.732	0.27
176_V	179_L	0.731	0.27
385_P	407_L	0.730	0.27
107_L	293_I	0.730	0.27
84_E	256_T	0.727	0.27
23_S	324_S	0.727	0.27
24_P	264_L	0.726	0.27
236_R	275_Y	0.722	0.27
134_M	145_L	0.721	0.26
227_L	230_E	0.720	0.26
72_I	398_L	0.718	0.26
41_F	44_G	0.718	0.26
5_L	59_S	0.717	0.26
118_Y	386_V	0.715	0.26
184_G	254_L	0.715	0.26
205_G	208_Q	0.715	0.26
209_L	246_I	0.713	0.26
80_D	309_L	0.713	0.26
346_T	388_L	0.712	0.26
59_S	315_V	0.712	0.26
304_V	308_I	0.709	0.26
69_F	73_L	0.709	0.26
1_M	266_G	0.709	0.26
191_F	199_K	0.709	0.26
298_L	411_Q	0.708	0.26
63_L	398_L	0.708	0.26
88_S	243_F	0.707	0.26
31_T	55_T	0.707	0.26
232_L	237_L	0.706	0.26
67_I	345_F	0.705	0.26
267_F	271_L	0.704	0.26
275_Y	284_R	0.703	0.26
91_K	420_I	0.703	0.26
71_G	287_E	0.703	0.26
388_L	396_T	0.697	0.25
14_T	388_L	0.697	0.25
384_Q	387_H	0.691	0.25
105_A	410_F	0.691	0.25
284_R	305_F	0.689	0.25
15_I	31_T	0.688	0.25
94_P	399_L	0.686	0.25
120_I	372_E	0.686	0.25
205_G	209_L	0.685	0.25
185_G	425_I	0.682	0.25
28_L	346_T	0.681	0.24
396_T	414_A	0.681	0.24
187_A	243_F	0.678	0.24
69_F	180_P	0.678	0.24
61_A	83_I	0.677	0.24
199_K	265_I	0.676	0.24
19_T	28_L	0.676	0.24
326_I	331_G	0.672	0.24
14_T	386_V	0.671	0.24
18_M	48_M	0.669	0.24
299_V	342_S	0.668	0.24
147_L	355_Y	0.668	0.24
187_A	212_R	0.667	0.24
16_L	196_M	0.667	0.24
172_S	255_G	0.666	0.24
389_M	411_Q	0.666	0.24
66_A	296_V	0.664	0.24
60_A	414_A	0.662	0.24
397_V	407_L	0.662	0.24
257_K	423_L	0.659	0.23
67_I	81_P	0.658	0.23
198_R	300_F	0.657	0.23
10_V	261_V	0.657	0.23
98_A	409_S	0.657	0.23
93_D	96_K	0.657	0.23
109_A	351_N	0.656	0.23
163_A	300_F	0.656	0.23
62_L	397_V	0.655	0.23
381_I	397_V	0.654	0.23
299_V	350_S	0.654	0.23
23_S	300_F	0.654	0.23
115_T	402_M	0.654	0.23
354_Y	362_F	0.652	0.23
13_F	338_V	0.651	0.23
264_L	309_L	0.651	0.23
350_S	386_V	0.651	0.23
11_T	328_S	0.650	0.23
1_M	28_L	0.650	0.23
14_T	59_S	0.648	0.23
5_L	38_I	0.648	0.23
33_I	37_L	0.646	0.23
243_F	246_I	0.645	0.23
268_V	272_T	0.645	0.23
30_I	428_L	0.644	0.23
388_L	394_A	0.644	0.23
91_K	119_M	0.642	0.23
357_G	384_Q	0.642	0.23
326_I	337_I	0.641	0.23
339_A	389_M	0.641	0.23
67_I	292_A	0.641	0.23
89_I	100_G	0.641	0.23
9_M	349_L	0.639	0.23
140_A	405_M	0.638	0.22
322_L	340_L	0.637	0.22
24_P	278_V	0.637	0.22
12_V	340_L	0.636	0.22
71_G	116_T	0.634	0.22
291_N	345_F	0.634	0.22
71_G	289_S	0.633	0.22
30_I	99_I	0.632	0.22
187_A	319_A	0.628	0.22
153_M	338_V	0.627	0.22
208_Q	211_P	0.626	0.22
366_A	376_I	0.625	0.22
147_L	388_L	0.625	0.22
62_L	393_V	0.624	0.22
347_F	350_S	0.623	0.22
1_M	174_F	0.623	0.22
224_A	283_E	0.621	0.22
179_L	374_V	0.620	0.22
38_I	423_L	0.619	0.22
280_M	283_E	0.617	0.22
176_V	194_F	0.617	0.22
34_V	43_K	0.615	0.21
197_G	203_R	0.613	0.21
154_T	290_G	0.613	0.21
246_I	250_V	0.611	0.21
322_L	427_L	0.609	0.21
347_F	419_V	0.607	0.21
238_I	242_L	0.606	0.21
259_P	309_L	0.605	0.21
167_L	377_A	0.605	0.21
397_V	422_S	0.601	0.21
59_S	165_S	0.600	0.21
240_L	272_T	0.599	0.21
298_L	356_F	0.598	0.21
306_A	349_L	0.598	0.21
246_I	283_E	0.597	0.21
165_S	361_I	0.597	0.21
29_T	404_K	0.597	0.21
318_I	405_M	0.596	0.21
161_T	309_L	0.595	0.21
1_M	291_N	0.594	0.21
89_I	412_R	0.593	0.21
323_I	371_I	0.591	0.20
103_V	427_L	0.591	0.20
94_P	387_H	0.590	0.20
15_I	37_L	0.590	0.20
188_C	424_V	0.590	0.20
93_D	399_L	0.589	0.20
236_R	340_L	0.589	0.20
25_I	297_L	0.589	0.20
341_T	428_L	0.588	0.20
91_K	120_I	0.588	0.20
243_F	427_L	0.587	0.20
32_P	314_M	0.584	0.20
302_A	383_G	0.583	0.20
18_M	50_L	0.583	0.20
334_F	421_T	0.583	0.20
354_Y	436_T	0.583	0.20
12_V	16_L	0.582	0.20
24_P	69_F	0.580	0.20
94_P	140_A	0.580	0.20
173_D	373_P	0.580	0.20
194_F	198_R	0.579	0.20
355_Y	408_G	0.578	0.20
31_T	183_L	0.577	0.20
87_L	128_L	0.576	0.20
68_L	411_Q	0.574	0.20
24_P	397_V	0.574	0.20
165_S	285_I	0.572	0.20
157_G	426_T	0.570	0.20
340_L	427_L	0.569	0.20
298_L	350_S	0.569	0.20
83_I	161_T	0.568	0.19
69_F	259_P	0.568	0.19
154_T	171_P	0.568	0.19
333_F	337_I	0.566	0.19
273_I	283_E	0.566	0.19
118_Y	144_M	0.566	0.19
278_V	397_V	0.565	0.19
202_N	268_V	0.564	0.19
132_I	404_K	0.563	0.19
103_V	423_L	0.563	0.19
61_A	79_F	0.563	0.19
153_M	402_M	0.562	0.19
104_L	116_T	0.562	0.19
68_L	275_Y	0.561	0.19
199_K	202_N	0.560	0.19
158_G	200_E	0.559	0.19
243_F	348_V	0.559	0.19
359_V	398_L	0.559	0.19
2_L	6_G	0.558	0.19
164_I	313_K	0.557	0.19
330_M	333_F	0.556	0.19
12_V	31_T	0.556	0.19
149_I	421_T	0.556	0.19
396_T	407_L	0.556	0.19
113_D	295_V	0.555	0.19
153_M	381_I	0.553	0.19
285_I	298_L	0.553	0.19
37_L	47_D	0.553	0.19
332_G	335_P	0.552	0.19
292_A	365_A	0.550	0.19
264_L	398_L	0.550	0.19
40_G	83_I	0.550	0.19
7_F	345_F	0.549	0.19
134_M	404_K	0.548	0.19
60_A	150_V	0.548	0.19
208_Q	214_I	0.547	0.19
19_T	228_E	0.547	0.19
53_I	252_I	0.547	0.19
227_L	236_R	0.547	0.19
231_Q	247_S	0.546	0.19
206_I	209_L	0.546	0.19
299_V	389_M	0.545	0.19
406_D	412_R	0.544	0.19
44_G	330_M	0.544	0.19
142_L	149_I	0.543	0.18
302_A	393_V	0.542	0.18
28_L	355_Y	0.542	0.18
71_G	121_T	0.541	0.18
69_F	204_I	0.541	0.18
72_I	293_I	0.540	0.18
323_I	361_I	0.540	0.18
347_F	386_V	0.539	0.18
147_L	351_N	0.539	0.18
103_V	209_L	0.539	0.18
3_T	299_V	0.538	0.18
372_E	375_E	0.538	0.18
24_P	338_V	0.537	0.18
296_V	305_F	0.537	0.18
361_I	424_V	0.537	0.18
83_I	143_A	0.537	0.18
385_P	422_S	0.536	0.18
20_K	406_D	0.536	0.18
172_S	269_L	0.535	0.18
130_K	404_K	0.535	0.18
315_V	405_M	0.534	0.18
210_E	431_I	0.534	0.18
178_L	414_A	0.533	0.18
243_F	280_M	0.532	0.18
115_T	295_V	0.532	0.18
317_A	321_S	0.530	0.18
87_L	99_I	0.530	0.18
340_L	428_L	0.530	0.18
95_V	204_I	0.530	0.18
30_I	248_I	0.529	0.18
108_I	262_L	0.528	0.18
76_A	377_A	0.528	0.18
10_V	273_I	0.528	0.18
351_N	385_P	0.527	0.18
226_T	229_S	0.527	0.18
305_F	397_V	0.525	0.18
202_N	412_R	0.525	0.18
33_I	261_V	0.525	0.18
43_K	431_I	0.523	0.18
9_M	346_T	0.523	0.18
143_A	299_V	0.523	0.18
28_L	104_L	0.521	0.18
117_T	145_L	0.521	0.18
55_T	435_I	0.521	0.18
242_L	246_I	0.520	0.18
7_F	180_P	0.519	0.18
90_V	128_L	0.519	0.18
180_P	245_V	0.518	0.18
128_L	293_I	0.515	0.17
83_I	337_I	0.514	0.17
82_L	165_S	0.514	0.17
97_I	128_L	0.514	0.17
321_S	354_Y	0.514	0.17
8_S	224_A	0.513	0.17
15_I	91_K	0.512	0.17
92_G	299_V	0.511	0.17
350_S	387_H	0.511	0.17
394_A	402_M	0.511	0.17
23_S	168_G	0.510	0.17
313_K	361_I	0.508	0.17
94_P	351_N	0.507	0.17
21_K	82_L	0.506	0.17
95_V	142_L	0.506	0.17
261_V	359_V	0.506	0.17
118_Y	349_L	0.506	0.17
94_P	380_S	0.506	0.17
2_L	412_R	0.505	0.17
119_M	413_F	0.505	0.17
101_S	424_V	0.505	0.17
168_G	246_I	0.505	0.17
144_M	399_L	0.505	0.17
103_V	283_E	0.504	0.17
367_S	373_P	0.503	0.17
392_L	396_T	0.503	0.17
229_S	423_L	0.503	0.17
296_V	394_A	0.502	0.17
30_I	340_L	0.502	0.17
4_I	247_S	0.502	0.17
354_Y	382_M	0.501	0.17
302_A	350_S	0.501	0.17
83_I	413_F	0.501	0.17
300_F	382_M	0.500	0.17
59_S	405_M	0.500	0.17

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4r0cA	3	0.9589	100	0.807	Contact Map
4f35D	2	0.8973	100	0.821	Contact Map
4r1iA	2	0.9749	100	0.823	Contact Map
2a65A	2	0.4566	73.8	0.974	Contact Map
4dx5A	3	0.3699	59.9	0.976	Contact Map
3w9iA	3	0.3516	53.1	0.977	Contact Map
3aqpA	1	0.3447	36.8	0.979	Contact Map
4k0jA	3	0.3311	32.3	0.98	Contact Map
2mofA	1	0.0868	29.4	0.98	Contact Map
4mt1A	3	0.3584	14.9	0.983	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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