GREMLIN Database
YRHG - Uncharacterized transporter YrhG
UniProt: O05399 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 266 (245)
Sequences: 2188 (1487)
Seq/√Len: 95.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
159_L238_I7.0211.00
159_L234_I4.5221.00
32_G115_M3.8801.00
158_V232_A3.8001.00
183_A187_L3.6471.00
95_L102_V3.5061.00
33_F122_F3.1211.00
29_L115_M3.0681.00
113_T233_F3.0301.00
234_I238_I2.9371.00
40_A123_V2.9131.00
155_F231_P2.7941.00
45_L195_A2.4861.00
211_I225_F2.4691.00
17_G94_A2.3801.00
125_Y129_H2.2641.00
84_I88_M2.2541.00
70_P190_W2.0831.00
167_W243_F2.0671.00
29_L111_I2.0631.00
95_L105_L2.0281.00
105_L109_W1.9681.00
25_L111_I1.8541.00
22_K104_E1.8361.00
154_S157_K1.8321.00
181_D184_G1.8311.00
87_N108_N1.8061.00
79_A248_Y1.7951.00
33_F118_I1.7661.00
17_G20_K1.7521.00
109_W237_V1.7371.00
84_I237_V1.7361.00
215_I225_F1.7321.00
106_A110_G1.7311.00
153_M161_S1.7201.00
163_I238_I1.7001.00
95_L100_I1.6981.00
37_A167_W1.6971.00
113_T204_V1.6731.00
74_I186_I1.6721.00
179_A184_G1.6531.00
124_A216_F1.6361.00
29_L118_I1.6341.00
28_L111_I1.6231.00
75_L171_L1.5981.00
215_I222_W1.5981.00
46_D65_G1.5891.00
145_A148_Q1.5781.00
88_M109_W1.5691.00
79_A174_W1.5541.00
117_L208_M1.5351.00
126_F160_I1.5241.00
226_I230_I1.4721.00
29_L33_F1.4631.00
204_V233_F1.4561.00
125_Y216_F1.4561.00
221_T224_Q1.4441.00
10_A253_H1.4261.00
156_G160_I1.4230.99
94_A100_I1.4160.99
110_G114_I1.4100.99
175_L188_G1.4000.99
45_L194_M1.3830.99
9_I178_G1.3520.99
31_L251_A1.3440.99
15_E99_K1.3190.99
153_M158_V1.3170.99
63_L194_M1.3130.99
41_L167_W1.3020.99
243_F247_I1.2910.99
178_G182_A1.2910.99
50_I142_K1.2820.99
66_A198_A1.2690.99
103_K107_I1.2620.99
126_F164_G1.2280.98
157_K161_S1.2210.98
121_L216_F1.2190.98
67_A190_W1.2170.98
102_V106_A1.2160.98
179_A182_A1.2140.98
101_S104_E1.2060.98
162_A231_P1.2020.98
237_V241_A1.1940.98
57_W60_L1.1880.98
207_N228_N1.1810.98
211_I215_I1.1810.98
71_V195_A1.1790.98
43_Y210_V1.1770.98
50_I65_G1.1720.98
148_Q152_D1.1710.98
45_L198_A1.1700.98
78_L182_A1.1690.98
230_I234_I1.1520.98
155_F234_I1.1370.98
34_L247_I1.1310.97
37_A40_A1.1250.97
244_V248_Y1.1190.97
233_F237_V1.0990.97
47_I146_V1.0960.97
24_P27_S1.0950.97
49_V64_I1.0940.97
149_G152_D1.0910.97
13_A177_F1.0880.97
81_A248_Y1.0850.97
165_C205_V1.0810.97
41_L168_L1.0790.97
93_M245_G1.0790.97
137_G141_E1.0770.97
113_T229_I1.0730.96
44_L199_I1.0640.96
72_G197_V1.0590.96
205_V208_M1.0510.96
114_I118_I1.0480.96
18_M99_K1.0470.96
96_F249_F1.0450.96
242_V246_L1.0450.96
96_F246_L1.0430.96
117_L121_L1.0420.96
28_L107_I1.0400.96
77_V189_I1.0360.96
124_A213_A1.0280.95
213_A217_A1.0270.95
54_P57_W1.0140.95
167_W244_V1.0070.95
142_K145_A1.0060.95
216_F222_W0.9970.95
31_L82_E0.9960.95
97_S249_F0.9850.94
41_L123_V0.9790.94
227_G231_P0.9730.94
47_I143_T0.9650.94
76_V81_A0.9600.93
67_A194_M0.9590.93
141_E145_A0.9580.93
155_F159_L0.9560.93
25_L29_L0.9540.93
38_F81_A0.9450.93
224_Q227_G0.9380.93
15_E19_K0.9350.93
159_L162_A0.9300.92
74_I191_F0.9300.92
143_T213_A0.9250.92
162_A233_F0.9240.92
38_F248_Y0.9150.92
26_P250_I0.9120.92
137_G140_L0.9070.91
129_H160_I0.9070.91
108_N112_V0.9030.91
15_E18_M0.8940.91
76_V162_A0.8910.91
155_F227_G0.8900.91
113_T117_L0.8810.90
82_E87_N0.8800.90
18_M22_K0.8760.90
84_I205_V0.8630.89
34_L38_F0.8580.89
47_I209_F0.8570.89
123_V167_W0.8570.89
21_I100_I0.8500.89
60_L64_I0.8490.88
161_S202_Q0.8450.88
121_L212_P0.8410.88
141_E144_I0.8380.88
204_V229_I0.8370.88
174_W248_Y0.8360.88
150_K206_A0.8320.87
77_V173_V0.8290.87
150_K166_N0.8250.87
51_G142_K0.8240.87
112_V174_W0.8230.87
49_V68_V0.8210.87
169_V196_F0.8200.87
12_A177_F0.8170.86
151_L224_Q0.8150.86
52_D66_A0.8030.86
158_V162_A0.7970.85
79_A171_L0.7960.85
231_P234_I0.7880.84
90_S94_A0.7860.84
92_A96_F0.7850.84
167_W171_L0.7850.84
95_L106_A0.7820.84
102_V105_L0.7780.84
11_E15_E0.7770.84
132_G157_K0.7770.84
229_I233_F0.7760.84
70_P218_G0.7720.83
84_I233_F0.7720.83
30_V247_I0.7680.83
122_F125_Y0.7640.83
124_A212_P0.7630.83
150_K196_F0.7620.82
79_A175_L0.7620.82
150_K207_N0.7570.82
166_N196_F0.7560.82
147_A211_I0.7560.82
54_P61_S0.7560.82
70_P74_I0.7540.82
28_L112_V0.7540.82
25_L110_G0.7500.81
40_A209_F0.7490.81
38_F75_L0.7490.81
147_A214_A0.7450.81
142_K146_V0.7440.81
84_I113_T0.7440.81
78_L178_G0.7420.81
175_L192_P0.7400.81
165_C232_A0.7350.80
155_F158_V0.7320.80
31_L174_W0.7320.80
151_L215_I0.7310.80
168_L189_I0.7290.80
53_L58_G0.7250.79
67_A74_I0.7250.79
82_E112_V0.7240.79
172_A196_F0.7240.79
138_P141_E0.7230.79
242_V247_I0.7190.79
196_F206_A0.7190.79
196_F207_N0.7180.79
113_T205_V0.7160.78
104_E107_I0.7160.78
121_L124_A0.7120.78
32_G112_V0.7070.77
144_I214_A0.7040.77
204_V232_A0.7030.77
85_T165_C0.7030.77
89_M186_I0.7010.77
131_V161_S0.6960.76
88_M240_G0.6940.76
212_P216_F0.6880.76
128_G216_F0.6880.76
14_I97_S0.6880.76
46_D50_I0.6840.75
88_M92_A0.6710.74
225_F229_I0.6680.73
8_E11_E0.6620.73
226_I231_P0.6620.73
166_N207_N0.6580.72
174_W252_Y0.6580.72
202_Q207_N0.6580.72
174_W244_V0.6570.72
146_V210_V0.6560.72
30_V251_A0.6530.72
151_L214_A0.6520.72
98_R102_V0.6500.71
110_G230_I0.6490.71
168_L192_P0.6460.71
215_I220_F0.6450.71
74_I189_I0.6450.71
75_L168_L0.6430.71
186_I191_F0.6430.71
209_F212_P0.6400.70
35_G86_G0.6380.70
47_I210_V0.6360.70
95_L98_R0.6360.70
53_L60_L0.6290.69
11_E14_I0.6290.69
91_V94_A0.6280.69
218_G224_Q0.6260.68
240_G245_G0.6140.67
8_E180_Q0.6140.67
222_W226_I0.6130.67
20_K209_F0.6090.66
140_L144_I0.6080.66
223_G226_I0.6060.66
131_V160_I0.6060.66
117_L120_A0.6030.66
127_F164_G0.6020.65
114_I134_T0.6000.65
31_L81_A0.6000.65
46_D197_V0.5940.64
169_V193_I0.5900.64
241_A245_G0.5860.63
79_A178_G0.5850.63
12_A16_A0.5830.63
32_G35_G0.5820.63
166_N228_N0.5810.63
170_C245_G0.5800.63
67_A187_L0.5800.63
68_V194_M0.5790.62
171_L244_V0.5730.62
52_D59_S0.5730.62
84_I240_G0.5730.62
89_M252_Y0.5730.62
32_G111_I0.5720.62
166_N169_V0.5720.62
33_F243_F0.5700.61
84_I204_V0.5690.61
89_M170_C0.5630.60
149_G219_S0.5610.60
90_S100_I0.5610.60
165_C196_F0.5600.60
72_G112_V0.5600.60
18_M100_I0.5600.60
184_G187_L0.5600.60
170_C202_Q0.5600.60
143_T214_A0.5570.60
86_G149_G0.5570.60
98_R101_S0.5550.59
33_F37_A0.5550.59
71_V75_L0.5530.59
166_N170_C0.5530.59
223_G227_G0.5520.59
49_V111_I0.5510.59
53_L61_S0.5510.59
196_F202_Q0.5510.59
248_Y252_Y0.5500.59
11_E118_I0.5500.59
23_L28_L0.5490.58
92_A241_A0.5460.58
123_V205_V0.5400.57
166_N193_I0.5400.57
176_S188_G0.5390.57
155_F230_I0.5390.57
239_G244_V0.5390.57
28_L108_N0.5390.57
78_L179_A0.5370.57
228_N232_A0.5360.57
57_W70_P0.5350.57
77_V101_S0.5350.57
14_I253_H0.5350.57
14_I17_G0.5340.56
207_N232_A0.5330.56
178_G252_Y0.5330.56
73_L189_I0.5320.56
194_M198_A0.5320.56
39_I43_Y0.5300.56
11_E99_K0.5290.56
82_E108_N0.5280.56
64_I109_W0.5280.56
106_A238_I0.5270.55
25_L107_I0.5270.55
43_Y209_F0.5260.55
95_L104_E0.5240.55
117_L226_I0.5240.55
75_L195_A0.5240.55
70_P193_I0.5230.55
29_L162_A0.5230.55
41_L90_S0.5200.54
153_M156_G0.5190.54
91_V112_V0.5180.54
72_G182_A0.5180.54
69_F196_F0.5150.54
158_V231_P0.5150.54
148_Q219_S0.5140.54
21_I108_N0.5140.54
120_A209_F0.5140.54
20_K32_G0.5130.53
16_A19_K0.5130.53
42_G68_V0.5120.53
89_M244_V0.5120.53
64_I201_F0.5120.53
29_L101_S0.5110.53
133_L161_S0.5100.53
53_L57_W0.5100.53
212_P215_I0.5090.53
100_I166_N0.5070.53
158_V227_G0.5050.52
114_I226_I0.5040.52
78_L189_I0.5040.52
22_K220_F0.5030.52
178_G188_G0.5030.52
89_M241_A0.5030.52
197_V206_A0.5010.52
140_L214_A0.5010.52
66_A173_V0.5000.52
68_V79_A0.5000.52
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3kcuA 3 0.8647 100 0.072 Contact Map
3klyA 3 0.8835 100 0.079 Contact Map
3tdsE 3 0.9774 100 0.106 Contact Map
4fc4A 3 0.9173 100 0.129 Contact Map
3llqA 3 0.8496 88.5 0.933 Contact Map
3cn5A 3 0.8271 82.2 0.938 Contact Map
3iyzA 3 0.7782 75.7 0.942 Contact Map
3zojA 3 0.8985 75.2 0.942 Contact Map
4nefA 4 0.8421 68.5 0.945 Contact Map
2zz9A 3 0.7707 64.9 0.946 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0088 seconds.