GREMLIN Database
YWRD - Putative gamma-glutamyltransferase YwrD
UniProt: O05218 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 525 (503)
Sequences: 5267 (3669)
Seq/√Len: 163.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
136_Q189_N6.9121.00
197_S201_E4.1701.00
265_N320_A4.1271.00
206_Q221_I3.6901.00
29_K126_D3.6851.00
133_D137_N3.5401.00
261_N316_A3.4651.00
11_M512_G3.4561.00
14_S20_S3.1061.00
75_G111_S2.9701.00
14_S40_V2.9071.00
283_V465_L2.6841.00
209_V221_I2.6801.00
239_Y438_D2.6561.00
146_C175_P2.5191.00
65_Q350_N2.4741.00
261_N313_K2.4101.00
442_H445_Q2.3701.00
43_C134_Y2.3141.00
240_R438_D2.2971.00
435_R441_M2.2771.00
264_E313_K2.2601.00
113_D117_K2.2551.00
443_P501_A2.2551.00
23_G40_V2.2161.00
42_A128_L2.2141.00
265_N317_K2.2081.00
245_Y408_C2.1721.00
132_R192_A2.1671.00
276_F478_K2.1601.00
113_D196_R2.1531.00
478_K482_S2.1471.00
129_E133_D2.1421.00
60_W115_V2.1311.00
64_H67_T2.1241.00
277_E482_S2.1201.00
114_A229_G2.1161.00
12_V23_G2.1111.00
73_Y231_W2.0941.00
171_K177_E2.0941.00
259_T430_T2.0891.00
212_L217_S2.0831.00
40_V342_A2.0641.00
198_A204_L2.0611.00
238_D243_S2.0471.00
477_Q480_K2.0411.00
71_K119_Y2.0121.00
351_A416_L1.9971.00
236_S243_S1.9891.00
324_G327_A1.9851.00
9_K347_A1.9731.00
280_H484_H1.9631.00
118_E231_W1.9171.00
447_I501_A1.9151.00
433_I437_L1.8901.00
189_N193_E1.8841.00
407_V433_I1.8781.00
194_K198_A1.8701.00
190_L203_D1.8651.00
183_E370_D1.8631.00
201_E225_K1.8581.00
174_V177_E1.8381.00
345_I510_L1.8241.00
25_R28_D1.8211.00
72_V247_A1.8171.00
262_I285_A1.8161.00
222_D226_A1.8151.00
190_L194_K1.8121.00
69_A233_A1.7971.00
34_F115_V1.7641.00
125_A193_E1.7571.00
190_L198_A1.7531.00
206_Q210_S1.7481.00
444_Q448_S1.7461.00
230_E301_A1.7341.00
153_I157_A1.7331.00
110_D229_G1.7311.00
20_S523_V1.7291.00
110_D196_R1.7261.00
236_S245_Y1.7151.00
38_V116_L1.7091.00
136_Q186_D1.6951.00
345_I351_A1.6931.00
109_V191_I1.6701.00
81_K226_A1.6691.00
114_A117_K1.6681.00
207_R371_T1.6581.00
25_R29_K1.6481.00
21_Q25_R1.6461.00
329_P332_S1.6461.00
444_Q513_G1.6451.00
121_R348_D1.6411.00
343_A416_L1.6241.00
318_Q321_E1.6171.00
448_S516_P1.6161.00
168_R173_P1.5841.00
415_I503_K1.5831.00
415_I436_M1.5821.00
281_V325_Y1.5761.00
116_L127_V1.5721.00
12_V40_V1.5631.00
47_V139_F1.5591.00
209_V213_Q1.5531.00
63_F70_V1.5351.00
190_L204_L1.5311.00
278_Y439_Y1.5171.00
116_L124_L1.5141.00
40_V344_V1.5071.00
25_R133_D1.5071.00
99_I212_L1.5001.00
476_I480_K1.4911.00
209_V220_T1.4771.00
324_G328_I1.4761.00
128_L132_R1.4761.00
78_R227_H1.4731.00
143_A175_P1.4721.00
432_I499_A1.4721.00
498_Q518_G1.4571.00
140_P178_R1.4371.00
161_Y164_D1.4341.00
82_N220_T1.4271.00
26_I122_L1.4261.00
114_A231_W1.4221.00
58_S111_S1.4181.00
357_S378_R1.4121.00
280_H284_E1.4071.00
434_T438_D1.4011.00
132_R189_N1.4001.00
267_D270_Q1.3991.00
113_D124_L1.3831.00
59_F250_N1.3801.00
123_S126_D1.3791.00
79_S395_R1.3751.00
210_S214_N1.3681.00
351_A413_P1.3671.00
271_I281_V1.3631.00
24_N28_D1.3611.00
237_S261_N1.3591.00
34_F62_T1.3571.00
82_N218_Y1.3481.00
238_D241_G1.3291.00
70_V245_Y1.3271.00
464_G487_E1.3251.00
284_E287_K1.3171.00
63_F68_K1.3111.00
98_G366_V1.3111.00
319_L322_E1.3061.00
212_L219_M1.3001.00
110_D197_S1.2991.00
503_K511_Q1.2971.00
261_N264_E1.2961.00
266_Y320_A1.2951.00
221_I225_K1.2931.00
478_K481_D1.2901.00
317_K320_A1.2891.00
26_I29_K1.2871.00
58_S75_G1.2871.00
72_V248_P1.2841.00
254_F297_L1.2681.00
13_V500_A1.2641.00
473_D477_Q1.2591.00
103_I375_L1.2561.00
126_D129_E1.2481.00
90_G93_A1.2481.00
435_R439_Y1.2431.00
226_A395_R1.2391.00
476_I486_V1.2371.00
436_M503_K1.2331.00
203_D206_Q1.2261.00
244_V407_V1.2231.00
242_Y414_K1.2201.00
477_Q481_D1.2171.00
505_D511_Q1.2161.00
26_I127_V1.2131.00
74_N232_A1.2051.00
105_V219_M1.2011.00
431_A451_R1.2011.00
201_E205_A1.1971.00
467_V476_I1.1971.00
368_A371_T1.1961.00
22_A43_C1.1941.00
288_K322_E1.1911.00
34_F352_V1.1881.00
81_K395_R1.1851.00
385_D388_H1.1811.00
32_N121_R1.1751.00
368_A375_L1.1741.00
61_L72_V1.1711.00
168_R177_E1.1681.00
24_N523_V1.1671.00
71_K118_E1.1661.00
259_T285_A1.1571.00
441_M449_E1.1551.00
409_K412_K1.1481.00
279_Y283_V1.1461.00
435_R449_E1.1421.00
159_T162_T1.1401.00
263_L430_T1.1371.00
73_Y229_G1.1311.00
34_F350_N1.1191.00
29_K122_L1.1181.00
73_Y115_V1.1111.00
164_D183_E1.1091.00
504_V510_L1.1051.00
63_F408_C1.1021.00
259_T286_L1.0981.00
63_F67_T1.0971.00
242_Y437_L1.0961.00
267_D271_I1.0951.00
284_E484_H1.0911.00
160_P164_D1.0861.00
222_D225_K1.0841.00
71_K231_W1.0831.00
173_P177_E1.0821.00
62_T115_V1.0780.99
408_C413_P1.0760.99
277_E325_Y1.0750.99
78_R395_R1.0740.99
302_F396_K1.0720.99
276_F475_T1.0720.99
436_M443_P1.0700.99
237_S313_K1.0680.99
257_L403_M1.0660.99
266_Y281_V1.0640.99
109_V196_R1.0630.99
342_A354_F1.0620.99
116_L121_R1.0600.99
272_E275_S1.0530.99
414_K503_K1.0520.99
73_Y119_Y1.0510.99
38_V127_V1.0500.99
110_D114_A1.0460.99
292_D319_L1.0450.99
211_H368_A1.0450.99
114_A228_R1.0440.99
276_F482_S1.0430.99
313_K317_K1.0420.99
187_S373_I1.0390.99
116_L123_S1.0380.99
25_R130_P1.0370.99
393_E396_K1.0370.99
279_Y475_T1.0370.99
26_I39_A1.0340.99
14_S23_G1.0330.99
99_I215_N1.0320.99
38_V112_W1.0310.99
136_Q182_K1.0300.99
292_D315_Y1.0290.99
19_A44_L1.0290.99
37_A352_V1.0260.99
114_A118_E1.0260.99
443_P513_G1.0240.99
163_A167_T1.0230.99
74_N250_N1.0220.99
129_E132_R1.0210.99
255_T297_L1.0200.99
219_M224_F1.0180.99
417_Y432_I1.0150.99
124_L127_V1.0140.99
124_L128_L1.0120.99
81_K222_D1.0120.99
60_W111_S1.0110.99
278_Y282_L1.0100.99
85_R391_T1.0100.99
413_P416_L1.0040.99
341_Y353_S1.0030.99
329_P333_R1.0000.99
243_S408_C0.9970.99
186_D189_N0.9950.99
258_L292_D0.9930.99
512_G522_A0.9910.99
146_C174_V0.9890.99
107_G227_H0.9890.99
275_S278_Y0.9860.99
464_G485_L0.9840.99
476_I488_V0.9810.99
83_V87_V0.9790.99
207_R210_S0.9780.99
268_F271_I0.9750.99
187_S371_T0.9730.99
76_S250_N0.9720.99
10_Q27_L0.9720.99
26_I126_D0.9700.99
26_I130_P0.9700.99
41_S356_Q0.9640.99
7_G11_M0.9620.99
303_A306_P0.9610.99
205_A224_F0.9590.99
358_L374_L0.9570.99
244_V260_L0.9550.99
204_L207_R0.9540.99
203_D207_R0.9540.99
37_A344_V0.9480.99
16_H47_V0.9480.99
242_Y409_K0.9470.99
85_R393_E0.9450.99
45_A184_L0.9430.99
268_F434_T0.9420.99
345_I502_I0.9420.99
103_I366_V0.9380.99
419_T428_T0.9350.99
11_M510_L0.9340.99
110_D113_D0.9320.99
412_K504_V0.9300.98
424_G428_T0.9270.98
467_V486_V0.9260.98
381_F423_E0.9250.98
262_I265_N0.9240.98
341_Y418_G0.9240.98
259_T289_S0.9230.98
351_A406_M0.9190.98
409_K414_K0.9190.98
145_Q149_T0.9170.98
15_P48_Y0.9170.98
387_N391_T0.9170.98
42_A109_V0.9160.98
187_S204_L0.9130.98
207_R370_D0.9080.98
150_E174_V0.9050.98
75_G354_F0.9040.98
13_V514_A0.9040.98
122_L126_D0.9030.98
240_R266_Y0.9030.98
165_I181_Q0.9020.98
475_T478_K0.9010.98
21_Q28_D0.9000.98
205_A221_I0.8990.98
416_L502_I0.8980.98
89_K386_E0.8970.98
136_Q185_A0.8960.98
181_Q373_I0.8940.98
22_A39_A0.8890.98
447_I499_A0.8880.98
7_G10_Q0.8880.98
22_A131_A0.8860.98
103_I364_S0.8860.98
18_L22_A0.8840.98
186_D193_E0.8830.98
262_I320_A0.8830.98
141_V146_C0.8800.98
13_V502_I0.8790.98
150_E153_I0.8780.98
390_N396_K0.8780.98
346_D350_N0.8760.98
279_Y471_F0.8750.98
209_V212_L0.8730.98
467_V471_F0.8730.98
383_S386_E0.8710.98
208_I375_L0.8660.98
278_Y434_T0.8610.98
171_K174_V0.8600.97
211_H214_N0.8580.97
262_I323_I0.8580.97
191_I196_R0.8550.97
11_M502_I0.8540.97
472_T476_I0.8520.97
116_L122_L0.8520.97
288_K319_L0.8510.97
260_L433_I0.8500.97
417_Y501_A0.8500.97
407_V415_I0.8500.97
340_A356_Q0.8480.97
427_Q453_V0.8460.97
52_T356_Q0.8460.97
168_R171_K0.8420.97
302_F393_E0.8410.97
83_V218_Y0.8400.97
79_S83_V0.8360.97
256_G430_T0.8330.97
146_C150_E0.8330.97
383_S391_T0.8320.97
480_K485_L0.8310.97
143_A147_R0.8310.97
46_V135_A0.8300.97
186_D190_L0.8280.97
313_K316_A0.8280.97
275_S439_Y0.8280.97
238_D264_E0.8280.97
277_E281_V0.8270.97
43_C47_V0.8250.97
184_L188_L0.8120.96
89_K93_A0.8110.96
46_V131_A0.8060.96
64_H71_K0.8040.96
441_M445_Q0.8020.96
298_T398_T0.8010.96
405_A417_Y0.7990.96
204_L373_I0.7970.96
73_Y114_A0.7960.96
83_V88_Y0.7950.96
73_Y118_E0.7910.96
466_R487_E0.7900.96
122_L127_V0.7860.96
211_H215_N0.7850.96
99_I211_H0.7850.96
181_Q184_L0.7820.96
262_I316_A0.7820.96
315_Y319_L0.7810.96
58_S354_F0.7800.96
123_S127_V0.7790.96
359_Y381_F0.7790.96
359_Y380_S0.7790.96
211_H366_V0.7760.95
480_K488_V0.7750.95
312_D316_A0.7750.95
467_V488_V0.7740.95
237_S316_A0.7730.95
45_A188_L0.7730.95
78_R301_A0.7730.95
162_T374_L0.7700.95
472_T475_T0.7690.95
141_V179_F0.7670.95
280_H323_I0.7630.95
238_D313_K0.7620.95
87_V218_Y0.7610.95
86_D89_K0.7580.95
23_G344_V0.7580.95
243_S411_G0.7570.95
286_L430_T0.7570.95
27_L344_V0.7550.95
240_R264_E0.7520.95
212_L375_L0.7510.95
234_P245_Y0.7490.94
235_V246_Q0.7480.94
384_L387_N0.7470.94
141_V145_Q0.7450.94
46_V184_L0.7430.94
160_P163_A0.7400.94
77_G378_R0.7390.94
262_I319_L0.7380.94
104_T379_G0.7370.94
269_T272_E0.7360.94
20_S521_A0.7350.94
282_L452_W0.7350.94
246_Q405_A0.7350.94
215_N366_V0.7350.94
212_L215_N0.7340.94
18_L47_V0.7330.94
78_R230_E0.7330.94
57_D77_G0.7310.94
279_Y452_W0.7300.94
286_L427_Q0.7270.94
12_V27_L0.7260.94
101_S218_Y0.7230.93
61_L406_M0.7220.93
240_R437_L0.7210.93
246_Q429_Q0.7200.93
39_A127_V0.7200.93
85_R89_K0.7200.93
317_K321_E0.7190.93
329_P334_P0.7170.93
22_A134_Y0.7150.93
16_H142_S0.7130.93
55_G373_I0.7130.93
97_R155_L0.7130.93
325_Y328_I0.7110.93
41_S342_A0.7090.93
18_L134_Y0.7080.93
385_D391_T0.7080.93
277_E478_K0.7080.93
198_A203_D0.7080.93
183_E186_D0.7070.93
246_Q256_G0.7060.93
443_P511_Q0.7060.93
167_T173_P0.7050.93
473_D488_V0.7050.93
415_I443_P0.7050.93
197_S225_K0.7040.92
232_A248_P0.7030.92
502_I510_L0.7000.92
115_V352_V0.7000.92
18_L140_P0.7000.92
135_A185_A0.6990.92
204_L208_I0.6990.92
436_M440_G0.6960.92
360_F377_N0.6950.92
153_I171_K0.6940.92
242_Y407_V0.6940.92
266_Y323_I0.6940.92
62_T352_V0.6920.92
106_P375_L0.6920.92
182_K186_D0.6910.92
162_T367_T0.6910.92
20_S40_V0.6860.91
132_R136_Q0.6860.91
246_Q403_M0.6850.91
8_T509_F0.6840.91
82_N213_Q0.6840.91
54_L109_V0.6820.91
141_V173_P0.6810.91
131_A135_A0.6810.91
41_S354_F0.6790.91
414_K436_M0.6780.91
40_V43_C0.6770.91
62_T350_N0.6760.91
22_A26_I0.6750.91
320_A323_I0.6740.91
255_T293_R0.6740.91
21_Q523_V0.6730.91
368_A373_I0.6730.91
269_T440_G0.6720.91
208_I224_F0.6720.91
42_A124_L0.6710.91
18_L21_Q0.6680.90
71_K233_A0.6670.90
59_F400_H0.6670.90
407_V437_L0.6670.90
142_S519_D0.6660.90
83_V392_L0.6640.90
282_L434_T0.6630.90
48_Y498_Q0.6620.90
469_G490_G0.6620.90
263_L268_F0.6610.90
88_Y98_G0.6610.90
406_M413_P0.6570.90
376_Q379_G0.6570.90
149_T173_P0.6560.90
20_S24_N0.6540.89
500_A514_A0.6530.89
213_Q220_T0.6530.89
207_R368_A0.6530.89
280_H287_K0.6520.89
113_D116_L0.6520.89
247_A251_S0.6510.89
309_R312_D0.6500.89
98_G364_S0.6490.89
21_Q24_N0.6490.89
64_H68_K0.6480.89
10_Q24_N0.6460.89
237_S264_E0.6460.89
108_M356_Q0.6460.89
243_S409_K0.6450.89
454_W465_L0.6450.89
20_S522_A0.6440.89
468_E517_R0.6440.89
187_S190_L0.6430.89
272_E278_Y0.6420.89
99_I366_V0.6410.88
256_G429_Q0.6390.88
38_V128_L0.6380.88
70_V408_C0.6370.88
161_Y211_H0.6360.88
447_I513_G0.6350.88
443_P447_I0.6350.88
43_C131_A0.6340.88
280_H482_S0.6340.88
343_A502_I0.6300.88
34_F64_H0.6290.88
273_H441_M0.6270.87
417_Y433_I0.6270.87
96_L360_F0.6260.87
345_I504_V0.6260.87
65_Q348_D0.6260.87
259_T427_Q0.6230.87
129_E192_A0.6210.87
59_F251_S0.6200.87
77_G104_T0.6200.87
428_T499_A0.6200.87
309_R334_P0.6200.87
284_E323_I0.6180.87
232_A301_A0.6170.87
428_T497_G0.6160.86
258_L262_I0.6160.86
153_I172_A0.6140.86
159_T367_T0.6120.86
436_M446_A0.6120.86
42_A112_W0.6110.86
110_D227_H0.6110.86
471_F476_I0.6110.86
148_H361_E0.6100.86
161_Y369_G0.6100.86
235_V297_L0.6100.86
166_F181_Q0.6090.86
514_A522_A0.6090.86
54_L191_I0.6070.86
345_I416_L0.6060.86
403_M429_Q0.6060.86
157_A163_A0.6060.86
274_G278_Y0.6060.86
204_L371_T0.6060.86
258_L315_Y0.6050.85
213_Q219_M0.6050.85
41_S112_W0.6040.85
351_A504_V0.6030.85
469_G488_V0.6030.85
405_A433_I0.6020.85
63_F413_P0.6020.85
424_G453_V0.6010.85
165_I367_T0.6010.85
263_L281_V0.5990.85
474_K477_Q0.5990.85
244_V405_A0.5980.85
194_K203_D0.5970.85
514_A518_G0.5960.85
45_A53_G0.5950.85
314_R318_Q0.5940.84
325_Y482_S0.5920.84
48_Y51_M0.5920.84
113_D195_G0.5920.84
38_V120_G0.5910.84
345_I413_P0.5910.84
178_R509_F0.5900.84
81_K220_T0.5900.84
263_L282_L0.5900.84
293_R297_L0.5900.84
96_L380_S0.5890.84
355_I425_Q0.5890.84
59_F76_S0.5890.84
341_Y355_I0.5880.84
159_T364_S0.5880.84
57_D76_S0.5860.84
210_S370_D0.5860.84
39_A131_A0.5850.84
424_G496_M0.5850.84
33_A352_V0.5840.83
311_L316_A0.5840.83
77_G401_T0.5820.83
272_E439_Y0.5810.83
26_I40_V0.5810.83
44_L340_A0.5810.83
431_A435_R0.5800.83
45_A52_T0.5800.83
414_K504_V0.5790.83
271_I278_Y0.5790.83
60_W75_G0.5780.83
417_Y429_Q0.5780.83
62_T71_K0.5760.83
298_T303_A0.5760.83
298_T389_V0.5740.82
265_N313_K0.5740.82
65_Q68_K0.5730.82
22_A25_R0.5730.82
67_T70_V0.5730.82
64_H69_A0.5720.82
434_T439_Y0.5720.82
473_D476_I0.5720.82
88_Y102_A0.5700.82
149_T167_T0.5700.82
378_R401_T0.5690.82
110_D201_E0.5690.82
64_H350_N0.5680.82
79_S382_F0.5680.82
41_S108_M0.5670.82
208_I373_I0.5660.81
273_H278_Y0.5660.81
145_Q179_F0.5640.81
175_P178_R0.5640.81
271_I275_S0.5630.81
309_R332_S0.5630.81
285_A323_I0.5630.81
128_L192_A0.5620.81
78_R81_K0.5620.81
258_L316_A0.5610.81
255_T307_L0.5590.81
285_A289_S0.5590.81
15_P340_A0.5590.81
256_G297_L0.5580.81
209_V219_M0.5580.81
10_Q347_A0.5570.80
413_P504_V0.5570.80
324_G482_S0.5560.80
61_L247_A0.5540.80
198_A201_E0.5540.80
32_N348_D0.5520.80
256_G426_P0.5520.80
76_S400_H0.5510.80
139_F179_F0.5500.80
58_S108_M0.5490.79
199_F205_A0.5480.79
436_M501_A0.5470.79
452_W471_F0.5470.79
282_L286_L0.5470.79
34_F60_W0.5460.79
424_G427_Q0.5440.79
74_N230_E0.5430.79
147_R151_K0.5430.79
80_G83_V0.5430.79
384_L388_H0.5420.79
330_A333_R0.5410.79
290_F426_P0.5410.79
343_A353_S0.5400.78
108_M357_S0.5400.78
367_T374_L0.5400.78
51_M358_L0.5380.78
84_T87_V0.5360.78
355_I400_H0.5360.78
211_H369_G0.5320.77
23_G39_A0.5310.77
32_N122_L0.5310.77
48_Y53_G0.5300.77
7_G24_N0.5300.77
205_A208_I0.5300.77
48_Y52_T0.5300.77
19_A43_C0.5300.77
381_F401_T0.5290.77
280_H325_Y0.5290.77
78_R397_R0.5290.77
76_S381_F0.5290.77
102_A364_S0.5290.77
390_N399_F0.5280.77
78_R226_A0.5270.77
388_H391_T0.5270.77
344_V352_V0.5270.77
212_L224_F0.5260.77
319_L332_S0.5260.77
44_L342_A0.5250.76
189_N192_A0.5220.76
95_P384_L0.5200.76
156_L162_T0.5190.76
153_I167_T0.5190.76
15_P518_G0.5180.75
268_F281_V0.5180.75
428_T496_M0.5180.75
61_L70_V0.5160.75
232_A247_A0.5160.75
60_W352_V0.5150.75
115_V119_Y0.5150.75
177_E180_V0.5140.75
246_Q426_P0.5140.75
61_L234_P0.5120.75
237_S311_L0.5110.75
378_R381_F0.5110.75
199_F204_L0.5110.75
292_D296_V0.5100.74
113_D127_V0.5100.74
263_L266_Y0.5100.74
64_H70_V0.5090.74
26_I344_V0.5090.74
282_L285_A0.5080.74
54_L373_I0.5080.74
291_L319_L0.5080.74
218_Y392_L0.5070.74
57_D104_T0.5070.74
296_V306_P0.5060.74
268_F439_Y0.5060.74
259_T426_P0.5060.74
286_L452_W0.5060.74
111_S229_G0.5060.74
50_H145_Q0.5060.74
98_G102_A0.5050.74
239_Y437_L0.5050.74
146_C172_A0.5040.74
296_V310_L0.5040.74
183_E187_S0.5030.73
191_I198_A0.5030.73
104_T376_Q0.5020.73
51_M144_D0.5010.73
244_V257_L0.5010.73
62_T119_Y0.5010.73
237_S257_L0.5010.73
401_T423_E0.5010.73
57_D400_H0.5000.73
185_A189_N0.5000.73
142_S512_G0.5000.73
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2e0wA 1 0.9143 100 0.021 Contact Map
2nlzA 4 0.9714 100 0.024 Contact Map
2i3oA 2 0.9562 100 0.049 Contact Map
3whrA 1 0.6571 100 0.345 Contact Map
2dg5A 1 0.64 100 0.383 Contact Map
2qmcA 1 0.64 100 0.385 Contact Map
4gdxA 1 0.6324 100 0.39 Contact Map
3g9kL 1 0.541 100 0.421 Contact Map
4gdxB 1 0.341 100 0.647 Contact Map
3whrB 1 0.341 100 0.649 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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