YTHA - BACSU - GREMLIN Contacts

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YTHA - Putative cytochrome bd menaquinol oxidase subunit I

UniProt:	C0SP90	Sequences: MDDLVLARSLFGTTMGFHIIFATLGVGLPLMILVAELIYQKTKDDHYAIMAKRWTKAQAVLLGVAIPTGTIAGTQLALLWPGFMEVIGRVMSLPFQIEIYAFFVEALFMSIYVYAADRLSPAMRIVAVFFVLVGAAASAVLITNVHAFEGTPAGFKILNGKITDVDPWAAFFNPSFFITAGHVVLSAFMTGAFIVASVAAYKMIRTRKKERVYRFHRKALLLALTIGGIFSLLTALNGHESAQMLYEYQPEKLAGAEGLFETRSHAPLAIGGFTDPNEEKVKWAIEIPWALSFLAANRFDTVVKGLNAFPRDEWPPLFIHTLFNAMVGVGMLLILYSIIGVVWRKVLKKDRFPTWLLIIFMTAGPFSLIGIEFGWIFACTGRQPWVIYHLLKTSDVVTTTGSIGVLFLFFTFVYAVLGAAVVYVLLYYFRKHPVDEDLNTAES	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	443 (428)
Sequences:	2792 (1489)
Seq/√Len:	72.0

ECOLI - CYDA APPC
BACSU - YTHA CYDA
HALSA - O54610

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
166_D	169_A	6.324	1.00
275_D	282_K	5.321	1.00
386_V	396_V	5.004	1.00
235_A	334_I	4.565	1.00
197_S	364_G	4.464	1.00
296_A	301_T	4.219	1.00
261_E	307_N	3.971	1.00
275_D	278_E	3.911	1.00
126_V	130_F	3.867	1.00
293_F	299_F	3.793	1.00
272_G	281_V	3.775	1.00
265_H	289_W	3.472	1.00
239_H	243_Q	3.017	1.00
331_M	335_L	2.960	1.00
185_L	237_N	2.935	1.00
243_Q	297_N	2.912	1.00
239_H	297_N	2.791	1.00
224_L	340_G	2.785	1.00
43_K	121_P	2.762	1.00
401_G	405_V	2.680	1.00
313_E	392_K	2.609	1.00
193_F	227_G	2.574	1.00
354_T	358_I	2.570	1.00
279_E	307_N	2.569	1.00
404_G	408_L	2.543	1.00
279_E	314_W	2.535	1.00
264_S	302_V	2.505	1.00
343_W	356_L	2.441	1.00
33_L	129_F	2.409	1.00
329_V	333_L	2.367	1.00
376_I	380_T	2.356	1.00
289_W	299_F	2.247	1.00
4_L	397_V	2.230	1.00
251_E	309_F	2.191	1.00
269_A	286_E	2.174	1.00
40_Q	125_I	2.158	1.00
262_T	308_A	2.134	1.00
269_A	320_H	2.112	1.00
311_R	314_W	2.104	1.00
355_W	358_I	2.067	1.00
267_P	286_E	2.033	1.00
34_V	38_I	2.022	1.00
16_G	372_E	1.993	1.00
37_L	125_I	1.979	1.00
119_L	127_A	1.979	1.00
260_F	281_V	1.968	1.00
263_R	266_A	1.960	1.00
329_V	366_F	1.930	1.00
231_S	334_I	1.919	1.00
190_T	371_I	1.917	1.00
37_L	129_F	1.901	1.00
19_I	183_V	1.874	1.00
325_A	373_F	1.870	1.00
335_L	339_I	1.826	1.00
281_V	284_A	1.825	1.00
7_A	403_I	1.821	1.00
392_K	395_D	1.815	1.00
156_K	165_V	1.810	1.00
319_I	380_T	1.800	1.00
426_L	430_R	1.793	1.00
185_L	233_L	1.764	1.00
316_P	319_I	1.746	1.00
13_T	411_T	1.719	1.00
339_I	343_W	1.714	1.00
17_F	418_G	1.704	1.00
82_G	85_E	1.702	1.00
111_I	119_L	1.701	1.00
3_D	7_A	1.671	1.00
340_G	356_L	1.666	1.00
116_A	124_R	1.651	1.00
45_D	49_I	1.638	0.99
383_Q	393_T	1.633	0.99
9_S	407_F	1.633	0.99
120_S	123_M	1.631	0.99
235_A	331_M	1.625	0.99
46_H	218_K	1.606	0.99
332_L	363_A	1.600	0.99
199_A	219_A	1.598	0.99
336_Y	363_A	1.595	0.99
16_G	376_I	1.592	0.99
276_P	318_F	1.590	0.99
189_M	231_S	1.572	0.99
221_L	345_K	1.567	0.99
336_Y	359_I	1.561	0.99
343_W	353_P	1.555	0.99
164_D	170_A	1.543	0.99
316_P	380_T	1.541	0.99
87_I	91_M	1.540	0.99
50_M	219_A	1.538	0.99
32_I	51_A	1.531	0.99
204_I	354_T	1.530	0.99
304_K	308_A	1.525	0.99
57_A	425_L	1.490	0.99
298_R	301_T	1.480	0.99
35_A	50_M	1.473	0.99
52_K	116_A	1.465	0.99
155_F	390_L	1.447	0.99
293_F	297_N	1.440	0.99
151_T	175_S	1.439	0.99
57_A	194_I	1.438	0.99
196_A	224_L	1.425	0.99
86_V	162_I	1.413	0.98
168_W	171_F	1.407	0.98
5_V	9_S	1.394	0.98
32_I	128_V	1.388	0.98
412_F	416_V	1.383	0.98
415_A	419_A	1.379	0.98
273_F	321_T	1.368	0.98
231_S	337_S	1.327	0.98
272_G	284_A	1.326	0.98
358_I	362_T	1.322	0.98
36_E	125_I	1.320	0.98
39_Y	48_A	1.315	0.98
104_V	134_G	1.313	0.98
139_A	184_V	1.303	0.97
59_A	113_V	1.302	0.97
24_L	194_I	1.300	0.97
204_I	361_M	1.297	0.97
278_E	282_K	1.296	0.97
262_T	302_V	1.295	0.97
363_A	366_F	1.294	0.97
144_N	176_F	1.290	0.97
202_K	207_R	1.285	0.97
289_W	293_F	1.277	0.97
54_W	219_A	1.276	0.97
12_G	380_T	1.272	0.97
328_G	332_L	1.269	0.97
129_F	133_V	1.267	0.97
256_A	377_F	1.265	0.97
3_D	400_T	1.254	0.97
193_F	336_Y	1.254	0.97
13_T	407_F	1.247	0.97
310_P	313_E	1.244	0.97
408_L	412_F	1.240	0.96
180_A	184_V	1.232	0.96
38_I	41_K	1.232	0.96
259_L	269_A	1.229	0.96
221_L	225_T	1.229	0.96
289_W	300_D	1.226	0.96
196_A	220_L	1.222	0.96
97_I	167_P	1.207	0.96
263_R	267_P	1.203	0.96
91_M	145_V	1.192	0.96
192_A	223_A	1.191	0.96
196_A	223_A	1.191	0.96
25_G	61_L	1.188	0.96
391_L	396_V	1.186	0.95
38_I	44_D	1.186	0.95
33_L	37_L	1.183	0.95
111_I	127_A	1.173	0.95
201_Y	205_R	1.166	0.95
143_T	176_F	1.164	0.95
231_S	235_A	1.163	0.95
24_L	28_L	1.161	0.95
423_Y	427_Y	1.148	0.95
136_A	184_V	1.143	0.94
181_G	237_N	1.141	0.94
24_L	368_L	1.138	0.94
192_A	227_G	1.134	0.94
198_V	429_F	1.134	0.94
193_F	333_L	1.134	0.94
253_L	303_V	1.134	0.94
405_V	409_F	1.119	0.94
48_A	52_K	1.115	0.94
30_L	132_L	1.112	0.94
265_H	300_D	1.106	0.93
186_S	371_I	1.104	0.93
151_T	244_M	1.103	0.93
246_Y	253_L	1.101	0.93
246_Y	295_A	1.084	0.93
328_G	331_M	1.080	0.93
26_V	187_A	1.080	0.93
31_M	222_L	1.080	0.93
253_L	256_A	1.079	0.93
338_I	342_V	1.069	0.92
31_M	226_I	1.067	0.92
325_A	369_I	1.065	0.92
4_L	394_S	1.059	0.92
409_F	413_V	1.056	0.92
369_I	373_F	1.055	0.92
339_I	355_W	1.048	0.91
175_S	248_Y	1.047	0.91
155_F	165_V	1.047	0.91
220_L	360_F	1.042	0.91
204_I	358_I	1.039	0.91
406_L	409_F	1.033	0.91
140_V	144_N	1.030	0.91
30_L	34_V	1.030	0.91
131_V	135_A	1.018	0.90
227_G	337_S	1.018	0.90
269_A	272_G	1.017	0.90
196_A	360_F	1.016	0.90
36_E	116_A	1.015	0.90
336_Y	366_F	1.015	0.90
34_V	222_L	1.009	0.90
51_A	116_A	1.005	0.90
122_A	126_V	1.005	0.90
50_M	215_F	1.002	0.90
217_R	221_L	1.000	0.89
39_Y	116_A	0.997	0.89
228_G	341_V	0.993	0.89
183_V	186_S	0.991	0.89
191_G	367_S	0.990	0.89
193_F	360_F	0.990	0.89
178_I	244_M	0.985	0.89
260_F	276_P	0.985	0.89
251_E	306_L	0.982	0.89
125_I	129_F	0.978	0.88
400_T	403_I	0.972	0.88
112_Y	128_V	0.967	0.88
178_I	240_E	0.965	0.88
345_K	349_K	0.964	0.88
36_E	128_V	0.964	0.88
336_Y	360_F	0.953	0.87
37_L	41_K	0.950	0.87
335_L	338_I	0.948	0.87
48_A	116_A	0.947	0.87
35_A	222_L	0.947	0.87
132_L	136_A	0.942	0.86
273_F	283_W	0.941	0.86
87_I	387_I	0.941	0.86
259_L	303_V	0.940	0.86
260_F	307_N	0.939	0.86
276_P	316_P	0.939	0.86
30_L	33_L	0.938	0.86
356_L	360_F	0.938	0.86
295_A	303_V	0.937	0.86
6_L	404_G	0.936	0.86
200_A	357_L	0.936	0.86
15_M	72_A	0.935	0.86
117_D	121_P	0.932	0.86
386_V	391_L	0.930	0.86
189_M	234_T	0.927	0.86
349_K	352_F	0.923	0.85
263_R	286_E	0.921	0.85
244_M	248_Y	0.921	0.85
332_L	335_L	0.921	0.85
177_F	181_G	0.921	0.85
45_D	48_A	0.918	0.85
273_F	282_K	0.918	0.85
269_A	284_A	0.916	0.85
314_W	317_L	0.902	0.84
215_F	433_P	0.900	0.84
416_V	420_A	0.898	0.84
133_V	137_A	0.897	0.84
236_L	240_E	0.893	0.83
9_S	13_T	0.891	0.83
83_F	87_I	0.890	0.83
123_M	126_V	0.885	0.83
229_I	233_L	0.880	0.82
268_L	294_L	0.879	0.82
347_L	350_D	0.879	0.82
175_S	179_T	0.879	0.82
6_L	407_F	0.872	0.82
343_W	349_K	0.872	0.82
51_A	55_T	0.869	0.82
201_Y	361_M	0.869	0.82
401_G	404_G	0.868	0.82
159_N	163_T	0.865	0.81
184_V	188_F	0.864	0.81
12_G	319_I	0.863	0.81
341_V	345_K	0.861	0.81
262_T	305_G	0.860	0.81
144_N	378_A	0.858	0.81
262_T	304_K	0.857	0.81
204_I	357_L	0.857	0.81
83_F	89_R	0.854	0.80
259_L	263_R	0.854	0.80
60_V	428_Y	0.851	0.80
188_F	230_F	0.849	0.80
307_N	314_W	0.848	0.80
426_L	429_F	0.847	0.80
279_E	311_R	0.847	0.80
245_L	256_A	0.847	0.80
200_A	220_L	0.847	0.80
259_L	304_K	0.845	0.80
151_T	174_P	0.845	0.80
157_I	162_I	0.841	0.79
89_R	161_K	0.841	0.79
130_F	134_G	0.841	0.79
189_M	227_G	0.838	0.79
194_I	368_L	0.836	0.79
158_L	161_K	0.834	0.79
118_R	430_R	0.833	0.79
181_G	185_L	0.832	0.79
408_L	411_T	0.831	0.79
156_K	163_T	0.831	0.79
140_V	171_F	0.828	0.78
296_A	300_D	0.823	0.78
386_V	393_T	0.822	0.78
121_P	125_I	0.822	0.78
405_V	408_L	0.822	0.78
116_A	128_V	0.820	0.78
340_G	360_F	0.816	0.77
195_V	223_A	0.815	0.77
225_T	341_V	0.814	0.77
253_L	291_L	0.809	0.77
206_T	209_K	0.808	0.77
40_Q	122_A	0.807	0.77
53_R	432_H	0.806	0.77
333_L	363_A	0.804	0.76
49_I	434_V	0.800	0.76
228_G	338_I	0.796	0.76
292_S	301_T	0.795	0.76
332_L	336_Y	0.793	0.75
71_I	414_Y	0.792	0.75
422_V	426_L	0.789	0.75
230_F	234_T	0.789	0.75
268_L	327_V	0.788	0.75
342_V	349_K	0.785	0.75
332_L	359_I	0.784	0.75
147_A	173_N	0.782	0.74
265_H	302_V	0.781	0.74
231_S	330_G	0.781	0.74
291_L	303_V	0.779	0.74
187_A	371_I	0.775	0.74
263_R	302_V	0.771	0.73
45_D	121_P	0.768	0.73
75_Q	80_W	0.768	0.73
87_I	148_F	0.768	0.73
76_L	95_F	0.767	0.73
37_L	40_Q	0.767	0.73
30_L	129_F	0.767	0.73
339_I	342_V	0.764	0.73
272_G	283_W	0.760	0.72
44_D	214_R	0.754	0.72
277_N	280_K	0.754	0.72
178_I	241_S	0.752	0.71
427_Y	431_K	0.752	0.71
346_V	349_K	0.750	0.71
271_G	283_W	0.750	0.71
93_L	164_D	0.746	0.71
322_L	373_F	0.746	0.71
292_S	303_V	0.745	0.71
40_Q	121_P	0.742	0.70
309_F	314_W	0.742	0.70
245_L	378_A	0.742	0.70
400_T	404_G	0.742	0.70
246_Y	304_K	0.741	0.70
135_A	188_F	0.741	0.70
202_K	432_H	0.741	0.70
289_W	301_T	0.740	0.70
30_L	136_A	0.739	0.70
334_I	338_I	0.739	0.70
269_A	281_V	0.737	0.70
189_M	333_L	0.737	0.70
61_L	194_I	0.737	0.70
262_T	303_V	0.737	0.70
402_S	405_V	0.735	0.70
233_L	237_N	0.730	0.69
55_T	112_Y	0.730	0.69
339_I	359_I	0.729	0.69
47_Y	433_P	0.729	0.69
147_A	179_T	0.728	0.69
322_L	377_F	0.725	0.69
187_A	234_T	0.725	0.69
23_T	91_M	0.723	0.68
275_D	280_K	0.723	0.68
342_V	347_L	0.722	0.68
19_I	371_I	0.720	0.68
123_M	127_A	0.719	0.68
304_K	309_F	0.719	0.68
44_D	49_I	0.717	0.68
266_A	305_G	0.715	0.68
225_T	229_I	0.714	0.67
342_V	346_V	0.713	0.67
41_K	44_D	0.713	0.67
97_I	141_L	0.713	0.67
60_V	424_V	0.712	0.67
47_Y	50_M	0.711	0.67
410_F	417_L	0.709	0.67
31_M	195_V	0.707	0.67
302_V	308_A	0.703	0.66
275_D	281_V	0.702	0.66
195_V	226_I	0.701	0.66
17_F	21_F	0.698	0.66
83_F	90_V	0.698	0.66
38_I	47_Y	0.698	0.66
108_F	127_A	0.697	0.66
205_R	362_T	0.696	0.65
264_S	304_K	0.695	0.65
251_E	388_Y	0.694	0.65
108_F	134_G	0.693	0.65
397_V	403_I	0.691	0.65
147_A	176_F	0.690	0.65
242_A	324_N	0.690	0.65
101_A	138_S	0.689	0.65
26_V	136_A	0.689	0.65
228_G	337_S	0.688	0.65
101_A	137_A	0.688	0.65
285_I	290_A	0.688	0.65
287_I	290_A	0.686	0.64
365_P	369_I	0.686	0.64
90_V	162_I	0.686	0.64
104_V	130_F	0.684	0.64
336_Y	356_L	0.683	0.64
226_I	230_F	0.681	0.64
90_V	164_D	0.676	0.63
175_S	244_M	0.674	0.63
266_A	301_T	0.673	0.63
6_L	403_I	0.670	0.63
345_K	348_K	0.669	0.62
111_I	424_V	0.668	0.62
116_A	432_H	0.667	0.62
319_I	376_I	0.667	0.62
415_A	418_G	0.666	0.62
83_F	149_E	0.666	0.62
81_P	84_M	0.666	0.62
259_L	291_L	0.665	0.62
261_E	302_V	0.661	0.61
253_L	295_A	0.661	0.61
272_G	286_E	0.661	0.61
231_S	329_V	0.660	0.61
406_L	429_F	0.659	0.61
260_F	284_A	0.659	0.61
119_L	123_M	0.657	0.61
221_L	351_R	0.656	0.61
36_E	40_Q	0.655	0.61
260_F	314_W	0.653	0.61
193_F	329_V	0.648	0.60
154_G	170_A	0.648	0.60
7_A	397_V	0.648	0.60
46_H	50_M	0.648	0.60
57_A	428_Y	0.646	0.60
186_S	234_T	0.646	0.60
156_K	164_D	0.646	0.60
44_D	47_Y	0.646	0.60
133_V	168_W	0.642	0.59
73_G	145_V	0.641	0.59
329_V	370_G	0.640	0.59
327_V	370_G	0.639	0.59
265_H	298_R	0.639	0.59
225_T	345_K	0.638	0.59
74_T	77_A	0.638	0.59
158_L	163_T	0.638	0.59
49_I	215_F	0.638	0.59
194_I	425_L	0.637	0.59
359_I	363_A	0.635	0.58
49_I	56_K	0.633	0.58
206_T	354_T	0.632	0.58
72_A	78_L	0.632	0.58
311_R	316_P	0.631	0.58
291_L	294_L	0.630	0.58
7_A	398_T	0.630	0.58
67_P	389_H	0.630	0.58
77_A	92_S	0.629	0.58
202_K	216_H	0.624	0.57
271_G	284_A	0.623	0.57
254_A	291_L	0.623	0.57
82_G	391_L	0.623	0.57
399_T	402_S	0.622	0.57
3_D	397_V	0.622	0.57
32_I	58_Q	0.621	0.57
421_V	425_L	0.617	0.56
30_L	188_F	0.617	0.56
35_A	51_A	0.616	0.56
356_L	359_I	0.615	0.56
289_W	298_R	0.615	0.56
232_L	334_I	0.614	0.56
313_E	385_W	0.614	0.56
34_V	42_T	0.614	0.56
136_A	140_V	0.613	0.56
143_T	183_V	0.612	0.56
428_Y	431_K	0.612	0.56
192_A	230_F	0.606	0.55
329_V	373_F	0.606	0.55
202_K	429_F	0.605	0.55
391_L	395_D	0.604	0.55
258_G	306_L	0.603	0.55
202_K	433_P	0.603	0.55
339_I	353_P	0.603	0.55
293_F	298_R	0.601	0.54
174_P	244_M	0.600	0.54
136_A	188_F	0.599	0.54
151_T	248_Y	0.598	0.54
46_H	214_R	0.597	0.54
258_G	324_N	0.595	0.54
281_V	317_L	0.594	0.53
42_T	47_Y	0.593	0.53
94_P	170_A	0.592	0.53
196_A	340_G	0.591	0.53
42_T	51_A	0.591	0.53
72_A	75_Q	0.591	0.53
93_L	167_P	0.591	0.53
412_F	415_A	0.591	0.53
216_H	219_A	0.589	0.53
49_I	208_K	0.589	0.53
411_T	415_A	0.589	0.53
148_F	170_A	0.589	0.53
120_S	126_V	0.587	0.53
217_R	351_R	0.586	0.52
224_L	345_K	0.586	0.52
55_T	116_A	0.585	0.52
29_P	144_N	0.585	0.52
141_L	171_F	0.583	0.52
36_E	48_A	0.583	0.52
237_N	240_E	0.581	0.52
258_G	272_G	0.580	0.52
38_I	42_T	0.579	0.52
247_E	277_N	0.578	0.51
404_G	409_F	0.578	0.51
224_L	343_W	0.577	0.51
333_L	366_F	0.576	0.51
215_F	219_A	0.576	0.51
50_M	54_W	0.575	0.51
101_A	142_I	0.575	0.51
403_I	407_F	0.575	0.51
251_E	314_W	0.575	0.51
110_S	113_V	0.574	0.51
265_H	299_F	0.573	0.51
224_L	341_V	0.571	0.51
61_L	73_G	0.571	0.51
331_M	339_I	0.570	0.50
273_F	318_F	0.569	0.50
84_M	87_I	0.569	0.50
339_I	356_L	0.568	0.50
29_P	32_I	0.568	0.50
260_F	279_E	0.566	0.50
220_L	357_L	0.566	0.50
276_P	317_L	0.566	0.50
7_A	58_Q	0.565	0.50
267_P	284_A	0.562	0.50
90_V	155_F	0.561	0.49
155_F	162_I	0.560	0.49
154_G	169_A	0.559	0.49
97_I	100_Y	0.558	0.49
26_V	30_L	0.558	0.49
320_H	324_N	0.558	0.49
38_I	222_L	0.557	0.49
61_L	368_L	0.556	0.49
372_E	376_I	0.555	0.49
189_M	192_A	0.553	0.48
365_P	433_P	0.553	0.48
17_F	415_A	0.552	0.48
390_L	394_S	0.552	0.48
310_P	314_W	0.551	0.48
358_I	361_M	0.550	0.48
353_P	357_L	0.550	0.48
208_K	435_D	0.549	0.48
417_L	421_V	0.549	0.48
397_V	425_L	0.549	0.48
327_V	331_M	0.549	0.48
19_I	367_S	0.548	0.48
361_M	364_G	0.547	0.48
241_S	244_M	0.547	0.48
89_R	162_I	0.546	0.48
21_F	67_P	0.545	0.47
3_D	404_G	0.545	0.47
70_T	107_L	0.543	0.47
17_F	64_V	0.542	0.47
17_F	20_I	0.542	0.47
125_I	128_V	0.541	0.47
31_M	223_A	0.541	0.47
194_I	429_F	0.541	0.47
228_G	232_L	0.541	0.47
28_L	194_I	0.540	0.47
423_Y	426_L	0.540	0.47
140_V	180_A	0.539	0.47
14_T	72_A	0.538	0.47
290_A	331_M	0.538	0.47
139_A	180_A	0.538	0.47
265_H	301_T	0.537	0.46
48_A	117_D	0.537	0.46
190_T	376_I	0.537	0.46
73_G	96_Q	0.536	0.46
314_W	319_I	0.536	0.46
189_M	230_F	0.536	0.46
276_P	312_D	0.535	0.46
130_F	133_V	0.534	0.46
148_F	162_I	0.534	0.46
349_K	353_P	0.534	0.46
399_T	403_I	0.532	0.46
112_Y	124_R	0.532	0.46
73_G	91_M	0.532	0.46
322_L	325_A	0.531	0.46
233_L	250_P	0.531	0.46
52_K	121_P	0.531	0.46
47_Y	423_Y	0.531	0.46
404_G	407_F	0.530	0.46
196_A	363_A	0.530	0.46
272_G	320_H	0.529	0.45
106_A	371_I	0.528	0.45
43_K	205_R	0.527	0.45
33_L	128_V	0.526	0.45
214_R	224_L	0.525	0.45
351_R	360_F	0.525	0.45
17_F	68_T	0.525	0.45
223_A	356_L	0.524	0.45
214_R	218_K	0.524	0.45
273_F	284_A	0.524	0.45
24_L	61_L	0.523	0.45
254_A	308_A	0.522	0.45
405_V	411_T	0.522	0.45
62_L	96_Q	0.522	0.45
236_L	331_M	0.520	0.44
56_K	431_K	0.520	0.44
179_T	241_S	0.519	0.44
281_V	286_E	0.519	0.44
112_Y	367_S	0.518	0.44
24_L	35_A	0.517	0.44
112_Y	116_A	0.517	0.44
83_F	145_V	0.517	0.44
83_F	86_V	0.517	0.44
200_A	360_F	0.517	0.44
354_T	357_L	0.516	0.44
82_G	396_V	0.515	0.44
25_G	64_V	0.515	0.44
208_K	214_R	0.514	0.44
6_L	408_L	0.514	0.44
254_A	262_T	0.514	0.44
106_A	428_Y	0.513	0.44
89_R	163_T	0.513	0.44
76_L	84_M	0.513	0.44
409_F	412_F	0.512	0.43
30_L	226_I	0.512	0.43
45_D	416_V	0.511	0.43
118_R	427_Y	0.511	0.43
208_K	434_V	0.510	0.43
266_A	299_F	0.510	0.43
169_A	172_F	0.510	0.43
9_S	12_G	0.509	0.43
10_L	77_A	0.509	0.43
386_V	392_K	0.509	0.43
419_A	423_Y	0.508	0.43
100_Y	137_A	0.507	0.43
193_F	366_F	0.506	0.43
227_G	333_L	0.506	0.43
274_T	321_T	0.506	0.43
9_S	380_T	0.506	0.43
238_G	323_F	0.505	0.43
280_K	283_W	0.504	0.42
274_T	279_E	0.504	0.42
263_R	420_A	0.503	0.42
231_S	333_L	0.503	0.42
277_N	311_R	0.502	0.42
264_S	296_A	0.502	0.42
189_M	368_L	0.502	0.42
31_M	83_F	0.501	0.42
44_D	218_K	0.501	0.42
39_Y	71_I	0.500	0.42
268_L	272_G	0.500	0.42
150_G	249_Q	0.500	0.42

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4xp4A	1	0.4447	87.7	0.967	Contact Map
3mk7A	1	0.447	52.2	0.975	Contact Map
2a65A	2	0.4086	42.8	0.977	Contact Map
3s8fA	1	0.5418	39.7	0.977	Contact Map
4us3A	1	0.3251	28.2	0.979	Contact Map
3ddlA	2	0.5124	24.1	0.98	Contact Map
2hi7B	1	0.2822	21.7	0.98	Contact Map
2ks1B	1	0.0993	19.9	0.98	Contact Map
3wfdB	1	0.4018	15.8	0.981	Contact Map
2kncA	1	0.1129	15.6	0.981	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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