GREMLIN Database
YLZI - Uncharacterized protein YlzI
UniProt: C0H412 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 71 (56)
Sequences: 38410 (32878)
Seq/√Len: 4393.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
35_G53_A2.3831.00
10_Q13_T2.3331.00
46_A49_E2.2911.00
32_L53_A2.2911.00
36_K54_F2.2531.00
19_I35_G2.1661.00
18_F34_N1.8501.00
39_V49_E1.8431.00
28_T31_T1.7241.00
39_V53_A1.6501.00
51_I55_Y1.4861.00
15_N19_I1.4031.00
21_Q31_T1.3851.00
56_R59_Q1.2861.00
22_I31_T1.2671.00
61_F64_D1.2451.00
15_N42_E1.2031.00
43_D47_V1.1881.00
29_T61_F1.1741.00
42_E46_A1.1641.00
33_S37_K1.1621.00
29_T57_K1.1471.00
22_I32_L1.1241.00
25_F28_T1.1241.00
15_N39_V1.1051.00
11_P41_K1.1021.00
32_L56_R1.1011.00
12_F42_E1.0951.00
37_K40_V1.0951.00
15_N38_F1.0501.00
15_N35_G1.0411.00
11_P38_F1.0331.00
20_E23_E1.0301.00
35_G39_V1.0201.00
39_V46_A1.0141.00
20_E24_C1.0081.00
40_V47_V1.0001.00
17_L20_E1.0001.00
56_R60_I0.9211.00
40_V54_F0.9071.00
37_K41_K0.8761.00
14_L18_F0.8751.00
13_T16_A0.8721.00
21_Q24_C0.8551.00
13_T17_L0.8191.00
17_L21_Q0.8181.00
11_P42_E0.8031.00
34_N37_K0.7911.00
55_Y58_I0.7841.00
15_N46_A0.7711.00
33_S64_D0.7631.00
40_V50_K0.7611.00
18_F38_F0.7601.00
33_S57_K0.7601.00
37_K54_F0.7431.00
21_Q28_T0.7301.00
27_D60_I0.7141.00
49_E52_A0.6821.00
19_I53_A0.6801.00
30_I34_N0.6741.00
50_K54_F0.6721.00
32_L60_I0.6681.00
32_L57_K0.6611.00
38_F42_E0.6511.00
17_L53_A0.6361.00
29_T33_S0.6291.00
30_I33_S0.6171.00
36_K57_K0.6051.00
29_T64_D0.6021.00
53_A56_R0.5961.00
16_A20_E0.5961.00
18_F31_T0.5741.00
57_K60_I0.5661.00
19_I39_V0.5481.00
49_E53_A0.5431.00
21_Q25_F0.5341.00
48_L52_A0.5291.00
12_F16_A0.5161.00
48_L51_I0.5141.00
23_E59_Q0.5141.00
12_F48_L0.5121.00
62_A65_Q0.5111.00
11_P47_V0.5101.00
36_K50_K0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4u04A 2 0.9718 99 0.2 Contact Map
2pziA 1 0.9718 99 0.206 Contact Map
4w9rA 2 0.9718 99 0.223 Contact Map
1pc2A 1 0.9718 98.9 0.227 Contact Map
3urzA 1 0.9718 98.9 0.25 Contact Map
1kt0A 2 0.9155 98.8 0.262 Contact Map
4l9pA 1 0.9718 98.8 0.267 Contact Map
2fbnA 2 0.9718 98.8 0.27 Contact Map
1tjcA 2 0.9718 98.8 0.27 Contact Map
2if4A 1 0.8028 98.8 0.271 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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